IRC Chat : 2013-06-08 - OpenMRS

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00:10:08 <jblaya> djazayeri, one other question, I ehcked and changes in the reporting compatibiltyh module are reflrected in the report_object database, however, if I modify something in the database like the patient search name or description it's not reflected in the cohort builder, any idea why?
00:10:45 <djazayeri> jblaya: I would expect that if you change something in that table, and then you reload the object in question, the change would be reflected
00:11:14 <jblaya> djazayeri, what's reload the object?
00:11:30 <jblaya> djazayeri, I tried reloading openmrs, tomcat, and the server, and nothing worked
00:11:52 <djazayeri> jblaya: you sure it's the right database you're looking at?
00:12:10 <jblaya> djazayeri, yes, I tried it with two databases
00:12:18 <jblaya> djazayeri, ie two different instances of openmrs
00:12:39 <jblaya> djazayeri, and I know it's the right one because if I change something on the web interface it's reflected in the database
00:12:50 <djazayeri> jblaya: I can't think of any reason that the change wouldn't be reflected. (I just meant, go back to cohort builder and do the search again.)
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00:13:47 <jblaya> djazayeri, I know, it's too weird...
00:14:29 <jblaya> djazayeri, shoot, looks like I might have to go and modify things one by one on the web interface
00:15:57 <jblaya> djazayeri, could there be another table and this is just a copy?
00:16:58 <jblaya> djazayeri, if I delete a row it does delete it from the cohort builder, too weird....
00:17:42 <djazayeri> jblaya: are these compound queries?
00:17:49 <djazayeri> jblaya: e.g. 1 and 2 and 3?
00:17:49 <jblaya> yes
00:17:57 <jblaya> djazayeri, all of them
00:18:16 <djazayeri> jblaya: hmm, actually, the problem may be that the "big query" contains copies of the "little ones" inside, rather than actual references
00:18:23 <djazayeri> jblaya: (gotta run)
00:18:47 <jblaya> djazayeri, ok, thanks
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04:15:17 <ArcTanSusan> hi! any1 here? I just added the openmrs-core to eclipse and i get error mssges on the import
04:15:40 <ArcTanSusan> the apache library is missing so i get these errors: "import org.apache.commons.lang.StringUtils;
04:15:41 <ArcTanSusan> import org.apache.commons.logging.Log;
04:15:41 <ArcTanSusan> import org.apache.commons.logging.LogFactory;"
04:16:03 <ArcTanSusan> does any1 know how to fix this? is this maven-related? I did mvn clean install, but problem persists
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05:07:10 <ArcTanSusan> hi! is any1 here?
05:08:19 <harshadura> hi thr
05:22:04 <harsha__> hi ArcTanSusan
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05:22:23 <ArcTanSusan> im getting an error when i run the openMRS
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05:23:30 <harsz89> ArcTanSusan, http://www.java-forums.org/new-java/10601-how-make-apache-commons-stringutils-etc-work-eclipse.html will be useful
05:23:34 <OpenMRSBot> <http://ln-s.net/-EW9> (at www.java-forums.org)
05:24:21 <ArcTanSusan> harsz89: should i get that external library?
05:24:40 <ArcTanSusan> java.lang.RuntimeException: Error occurred while trying to get the updates needed for the database. Unable to get a connection to the database. Please check your openmrs runtime properties file and make sure you have the correct connection.username and connection.password set
05:24:48 <ArcTanSusan> that's the error when i type in
05:24:53 <djazayeri> ArcTanSusan: you should not need to manually download any external libraries
05:24:58 <ArcTanSusan> http://0.0.0.0:8080/openmrs/initialsetup
05:40:52 <ArcTanSusan> il write to the mailing lsit
05:47:52 <harsz89> ArcTanSusan,
05:48:27 <harsz89> ArcTanSusan, did you specify the correct username and password of your database in runtime property file
05:48:46 <ArcTanSusan> i dunno this file or where it is
05:49:05 <harsz89> ArcTanSusan, are you on ubuntu or windows?
05:49:15 <ArcTanSusan> macoS
05:49:25 <harsz89> ArcTanSusan, ah okey
05:49:44 <harsz89> ArcTanSusan, there is a file callled openmrs-runtime properties
05:50:08 <harsz89> where you need to specify the username and password of your local database
05:50:09 <ArcTanSusan> ahh
05:50:22 <ArcTanSusan> openmrs-runtime properties ? wat file type?
05:50:48 <harsz89> ArcTanSusan, in ubuntu it's in the .OpenMRS directory
05:51:00 <harsz89> ArcTanSusan, in home directory
05:51:19 <harsz89> ArcTanSusan, it's a simple text file
05:51:24 <ArcTanSusan> properties.xml??
05:51:55 <harsz89> file name is openmrs-runtime.properties
05:53:23 <ArcTanSusan> there is no file with that name
05:53:27 <harsz89> AdaYeung, https://wiki.openmrs.org/display/docs/Installation+for+Developers+on+Mac+OS
05:53:56 <harsz89> AdaYeung, sorry
05:54:00 <harsz89> ArcTanSusan, https://wiki.openmrs.org/display/docs/Installation+for+Developers+on+Mac+OS
05:55:23 <ArcTanSusan> agh i read it. im using sudo /usr/local/mysql/support-files/mysql.server start
05:55:32 <ArcTanSusan> but i get the error on terminal that
05:55:41 <ArcTanSusan> sudo: /usr/local/mysql/support-files/mysql.server: command not found
05:56:00 <harshadura> harsz89: mchn this could be a problem with JVM (JDK 64bit) eh?
05:57:30 <harshadura> ArcTanSusan: could pls tell us abt ur system , wha jdk installed ?
05:57:42 <harshadura> openjdk or sun ?
05:57:51 <harsz89> ArcTanSusan, there is a problem with connecting to the database
05:57:51 <ArcTanSusan> sun
05:57:55 <ArcTanSusan> yes
05:57:57 <harshadura> ok
05:58:06 <harshadura> oh
05:58:27 <harsz89> ArcTanSusan, so you need to specify your mysql root username and password in properties file
05:58:47 <harsz89> ArcTanSusan, you install the mysql ryt?
05:58:51 <ArcTanSusan> yes
05:58:55 <ArcTanSusan> i did brew install mysql
05:59:12 <ArcTanSusan> mysql-5.6.10 already installed
05:59:17 <harsz89> ArcTanSusan, and did you setup a password for mysql root?
05:59:24 <ArcTanSusan> yes
05:59:27 <harsz89> ArcTanSusan, good
05:59:49 <harsz89> ArcTanSusan, then you need to find the .OpenMRS directory in your home
06:00:01 <ArcTanSusan> k
06:00:46 <harsz89> ArcTanSusan, in article says The ~/.OpenMRS folder contains a file called openmrs-runtime.properties. It is generated during the initialisation of the application and contains settings for the application, in particular settings used when connecting to the database. Once OpenMRS has created its database, it accesses MySQL with the username and password as specified in the openmrs-runtime.properties file.
06:01:11 <harsz89> ArcTanSusan, i guess you went through it
06:01:22 <ArcTanSusan> agh i didn't read that part
06:01:30 <harsz89> ArcTanSusan, oopz
06:01:48 <harsz89> ArcTanSusan, hope now you can solve the proble
06:01:56 <harsz89> *problem
06:02:14 <ArcTanSusan> ok give me a few minutes of debugging
06:02:15 <harsz89> ArcTanSusan, another thing as djazayeri said don't add jars manually
06:02:42 <harsz89> ArcTanSusan, all will be come through the dependencies
06:03:26 <harsz89> ArcTanSusan, and standalone version of openmrs available at downloading
06:03:39 <harsz89> ArcTanSusan, and you can also use that
06:04:07 <harsz89> ArcTanSusan, there you just need to run the jar then all will be done by it to you :)
06:07:28 <harshadura> ArcTanSusan: simply do a "rm -rf ~/.OpenMRS" and try running the webapp again, IMO
06:20:53 <ArcTanSusan> ok
06:22:28 <ArcTanSusan> the user + password in .properties file is encrype
06:23:22 <harsz89> ArcTanSusan, yeah
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06:23:54 <harsz89> ArcTanSusan, when running the openmrs initial setuo you will be ask to enter it
06:25:04 <harsz89> ArcTanSusan, as harshadura said can you just deleted the .Openmrs folder and the run initial setup again
06:25:31 <harsz89> ArcTanSusan, no need to change the user and password in openmrs runtime property file
06:25:40 <harsz89> ArcTanSusan, understand?
06:26:52 <harsz89> ArcTanSusan, sorry i previously said you need to specify it in the property file and it's wrong
06:27:36 <ArcTanSusan> understood. all is working now.
06:27:41 <ArcTanSusan> re-creating the table+db
06:28:28 <harsz89> ArcTanSusan, good :) :D
06:28:30 <ArcTanSusan> the problem is that i forgot my root mysql password :(
06:28:39 <harsz89> ArcTanSusan, yeah :D
06:28:41 <ArcTanSusan> ???Error executing sql: create database if not exists `?` default character set utf8 - Could not create connection to database server. Attempted reconnect 3 times. Giving up.???
06:28:42 <ArcTanSusan> Unable to create the database. The password might be incorrect or the database is not started.
06:28:55 <ArcTanSusan> i was so close!
06:29:20 <ArcTanSusan> also, i trouble running the mysql start server command :(
06:29:29 <ArcTanSusan> that could the the root of the prob
06:29:29 <harsz89> ArcTanSusan, oopz
06:29:35 <harsz89> ArcTanSusan, yeah
06:29:56 <harsz89> ArcTanSusan, did you able to log into mysql from console as a root user?
06:30:23 <ArcTanSusan> no
06:30:30 <ArcTanSusan> i forgot my pw..
06:30:40 <ArcTanSusan> and the error is command not found after i type sudo /usr/local/mysql/support-files/mysql.server start
06:32:12 <harsz89> ArcTanSusan, can't you reset the root password
06:32:48 <ArcTanSusan> yes im googling that now
06:36:29 <nribeka> there's a command to reset your password ArcTanSusan
06:36:54 <ArcTanSusan> http://www.cmdln.org/2008/02/09/reset-mysql-root-password/ yes
06:36:58 <OpenMRSBot> <http://ln-s.net/-EWk> (at www.cmdln.org)
06:39:25 <ArcTanSusan> i still get the error mssge plus this new mssge: "Tasks completed so far:
06:39:26 <ArcTanSusan> Created database openmrs"
06:40:03 <nribeka> do you have the root password?
06:40:13 <nribeka> if you do, login to mysql and then drop the database
06:40:22 <nribeka> and also drop the user
06:40:47 <nribeka> the username should be something like: openmrsweb_user or openmrs_user
06:41:06 <nribeka> make sure you're not dropping important data when you drop your database :P
06:45:33 <ArcTanSusan> i don't have the root pw
06:45:45 <ArcTanSusan> sudo /usr/local/mysql/support-files/mysql.server start command not found becuz i don't have a folder "mysql"
06:45:51 <ArcTanSusan> inside the "local" folder
06:48:04 <harsz89> ArcTanSusan, your mysql server is running ryt?
06:48:23 <ArcTanSusan> no it is not. I type in "mysql" and i get an error mssge in terminal
06:48:34 <ArcTanSusan> ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/tmp/mysql.sock' (2)
06:49:03 <nribeka> ps uax
06:49:18 <nribeka> and then this to reset root password: http://dev.mysql.com/doc/refman/5.0/en/resetting-permissions.html
06:49:21 <OpenMRSBot> <http://ln-s.net/-Ou> (at dev.mysql.com)
06:51:16 <ArcTanSusan> mysql.server start works!
06:52:20 <harsz89> ArcTanSusan, good :D
06:58:32 <ArcTanSusan> the other problem: "Unable to find a runtime properties file. Initial setup is needed. View the webapp to run the setup wizard. "
06:58:40 <ArcTanSusan> im stuck on initial setup page
06:59:17 <ArcTanSusan> should i run mvm clean install again/
06:59:25 <ArcTanSusan> and then do mvm jetty:run?
07:00:57 <nribeka> i think you're stuck because the user for the openmrs is already exists ArcTanSusan
07:01:33 <nribeka> you need to remove that user first probably?
07:02:17 <ArcTanSusan> ahh.but how?
07:02:24 <harsz89> nribeka, i think no need of remove the user
07:02:40 <ArcTanSusan> im just gonna reset root password now
07:02:43 <harsz89> nribeka, is that because runtime property file is not there?
07:02:44 <ArcTanSusan> since i can access the mysql dayb
07:02:46 <ArcTanSusan> db
07:06:07 <harsz89> ArcTanSusan, delete the .OpenMRS direcotory and the openmrs database and run the jetty again
07:06:14 <harsz89> ArcTanSusan, may be it will work
07:06:37 <ArcTanSusan> ok
07:06:40 <ArcTanSusan> ill do that
07:10:36 <ArcTanSusan> same error
07:11:04 <ArcTanSusan> WARN - OpenmrsUtil.getRuntimeProperties(2485) |2013-06-08 00:07:20,811| Unable to find a runtime properties file. Initial setup is needed. View the webapp to run the setup wizard.
07:11:05 <ArcTanSusan> WARN - InitializationFilter.verifyConnection(915) |2013-06-08 00:08:00,036| Error while checking the connection user account.
07:11:09 <ArcTanSusan> im going a mvm clean install now
07:11:28 <ArcTanSusan> i haven't reset the root password yet, becuz the example gives "mydb" as the db name
07:15:04 <ArcTanSusan> ok rest the root pw
07:15:58 <ArcTanSusan> progress: initial setup is generating all the schemas+ tables!!
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07:16:10 <ArcTanSusan> 100% in each category
07:16:18 <harsz89> ArcTanSusan, cool :)
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07:16:35 <ArcTanSusan> Created database openmrs
07:16:35 <ArcTanSusan> Created user openmrs_user
07:16:36 <ArcTanSusan> Granted user openmrs_user all privileges to database openmrs
07:16:38 <ArcTanSusan> Created database tables and added core data
07:16:38 <ArcTanSusan> Added demo data
07:16:50 <nribeka> yay!
07:17:50 <ArcTanSusan> but i hit a last error! im so close..
07:17:52 <ArcTanSusan> HibernateContextDAO.authenticate(194) |2013-06-08 00:16:05,403| Failed login attempt (login=admin) - Invalid username and/or password: admin
07:18:06 <ArcTanSusan> this is the above culprit error
07:18:15 <ArcTanSusan> i can't login
07:19:07 <nribeka> admin Admin123
07:21:36 <ArcTanSusan> the text of the initial setup page is messed up..
07:21:45 <ArcTanSusan> there are "??" everywhere
07:21:46 <ArcTanSusan> ok
07:21:59 <ArcTanSusan> should i use my root user + password to admin and Admin123?
07:22:03 <ArcTanSusan> **set
07:22:16 <ArcTanSusan> in mySQL connection?
07:23:01 <harsz89> ArcTanSusan, nothing to do with mysql
07:23:27 <harsz89> ArcTanSusan, just log in using user admin pass Admin123
07:23:44 <ArcTanSusan> im still stuck on initial setup with the creation of db s and tables
07:23:47 <ArcTanSusan> ???Error executing sql: create database if not exists `?` default character set utf8 - Could not create connection to database server. Attempted reconnect 3 times. Giving up.???
07:23:48 <ArcTanSusan> ???install.error.unableCreateDb???
07:23:52 <ArcTanSusan> thats the exact error mssge
07:24:02 <ArcTanSusan> in red font on the initialsetuppage
07:24:36 <ArcTanSusan> am i missing this https://modules.openmrs.org/modules/view.jsp?module=logic?
07:24:46 <ArcTanSusan> do i need to add this logic module somewhere?
07:25:50 <ArcTanSusan> Caused by: java.sql.SQLException: Access denied for user 'openmrs_user'@'localhost' (using password: YES)
07:28:56 <ArcTanSusan> i took a screenshot
07:28:56 <nribeka> i thought it's working already?
07:29:02 <ArcTanSusan> not quite!
07:32:17 <ArcTanSusan> https://dev-a-openmrs-org.googlegroups.com/attach/e00e10ed624726a1/Screen%20Shot%202013-06-08%20at%2012.29.21%20AM.png?view=1∂=4
07:32:18 <harsz89> ArcTanSusan, did you specify the root user and the password at your initial setup page
07:32:19 <OpenMRSBot> <http://ln-s.net/-EXS> (at dev-a-openmrs-org.googlegroups.com)
07:32:46 <ArcTanSusan> setup pg only asked for password so i typed in the password (the same one i reset mysql to)
07:32:55 <ArcTanSusan> screenshot is on google group
07:33:12 <harsz89> ArcTanSusan, you have to give the root user password there
07:33:29 <ArcTanSusan> yes ! maybe i reset the password incorrect
07:33:30 <ArcTanSusan> ly
07:37:04 <nribeka> try stopping and restarting jetty
07:37:12 <nribeka> check the openmrs database
07:37:20 <nribeka> use the privilege in the runtime properties
07:37:52 <ArcTanSusan> privilege?
07:38:23 <nribeka> i mean the database user and database password
07:39:40 <ArcTanSusan> Invalid username and/or password: admin Unable to complete the startup.
07:41:25 <ArcTanSusan> i think i did the reset incorrectly.
07:41:32 <ArcTanSusan> for the reset root pw
07:41:34 <ArcTanSusan> in mysql
07:42:02 <ArcTanSusan> WARN - InitializationFilter$InitializationCompletion$1.run(1648) |2013-06-08 00:39:13,269| Unable to complete the startup.
07:42:02 <ArcTanSusan> org.openmrs.api.context.ContextAuthenticationException: Invalid username and/or password: admin
07:43:36 <ArcTanSusan> UPDATE mysql.user SET Password=PASSWORD('password') WHERE User='root'; --> ERROR: ERROR 1142 (42000): UPDATE command denied to user ''@'localhost' for table 'user'
07:45:03 <harsz89> ArcTanSusan, I suggest that
07:45:13 <harsz89> ArcTanSusan, complete reinstall of mysql
07:45:28 <harsz89> ArcTanSusan, then many problems will be solved
07:45:43 <ArcTanSusan> ok il think about this later. it's getting late!
07:45:57 <ArcTanSusan> thnx for all your help harsz89 and nribeka
07:46:00 <harsz89> ArcTanSusan, Won't take much time
07:46:29 <harsz89> ArcTanSusan, after reinstalling delete the .OpenMRS and run jetty
07:46:51 <harsz89> ArcTanSusan, make sure you set a password for root after your reinstallation
07:47:03 <ArcTanSusan> k
07:47:14 <ArcTanSusan> http://tomkeur.net/39/how-to-remove-mysql-completely-mac-os-x-leopard.html
07:47:19 <OpenMRSBot> <http://ln-s.net/-EXk> (at tomkeur.net)
07:47:20 <ArcTanSusan> is this how to un-install mysql?
07:47:20 <harsz89> ArcTanSusan, and meanwhile if you badly need to check openmrs
07:47:37 <harsz89> harsz89, use openmrs standalone version
07:47:41 <ArcTanSusan> yes
07:50:13 <ArcTanSusan> i did brew uninstall mysql
07:50:23 <ArcTanSusan> then i did brew install mysql for macOS
07:50:43 <harsz89> ArcTanSusan, okey
07:50:49 <harsz89> try to log as
07:51:01 <harsz89> ./mysql -u root -p
07:51:09 <harsz89> password as empty
07:51:15 <harsz89> if succeed
07:51:25 <harsz89> then set a root password
07:52:07 <ArcTanSusan> "no such file or directory"
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07:54:47 <ArcTanSusan> how do i set root pw?
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07:55:55 <harsz89> can you log in to mysql without password
07:55:56 <harsz89> ?
07:57:56 <ArcTanSusan> yes i can type "mysql" in terminal to get to the db terminal
07:58:11 <ArcTanSusan> however when i reset the root password, i get error: "db not found"
07:58:32 <ArcTanSusan> mysql> update user set Password=PASSWORD('passowrd_here') where user='root';
07:58:32 <ArcTanSusan> ERROR 1046 (3D000): No database selected
07:59:09 <nribeka> show databases; --> will show all database
07:59:35 <nribeka> we can continue tomorrow ArcTanSusan
07:59:50 <nribeka> it's getting late there i think
08:00:06 <ArcTanSusan> yes thnx ill be around tomorrow same time
08:00:18 <ArcTanSusan> to continue debugging bye!
08:00:29 <nribeka> cya
08:00:51 <harsz89> use this mysqladmin -u root password NEWPASSWORD
08:00:57 <harsz89> in terminal
08:01:04 <harsz89> ArcTanSusan, cya ArcTanSusan
08:01:07 <harsz89> :)
08:02:07 <ArcTanSusan> mysqladmin: connect to server at 'localhost' failed
08:02:08 <ArcTanSusan> error: 'Access denied for user 'root'@'localhost' (using password: NO)'
08:02:08 <ArcTanSusan> :(
08:02:16 <ArcTanSusan> c yaa
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08:18:19 <OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Modules: Kenya MFL Synchronization Module 1.1 uploaded to OpenMRS Module Repository <https://modules.openmrs.org/modules/view.jsp?module=kenyamflsync&ampversion=&amp1.1>
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20:35:43 <dkayiwa> AdaYeung: are you still travelling? :)
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