IRC Chat : 2013-05-06 - OpenMRS

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03:26:54 <jblaya> mseaton, you around by any chance? I had a quick question about reporting compatibility
03:30:48 <jblaya> nribeka, don't know if the IV is still going and if you've played around with the reporting compatibility module? I need to figure out what function replaced the deprecated evaluate function
03:30:50 <jblaya> cohortService.evaluate(c.getCohortDefinition(), null);
03:30:59 <jblaya> is giving me an error in my code
03:32:23 <nribeka> i'm almost gone
03:32:43 <nribeka> cohortService.evaluate --> this one from reporting right?
03:32:51 <jblaya> reporting compatibility
03:33:26 <jblaya> I'm still using reporting compatibility because of the cohort builder which is so pretty :D
03:34:16 <nribeka> hmmm
03:34:41 <nribeka> can you pastebin your code jblaya ?
03:35:22 <jblaya> nribeka, yep, let me get it
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03:39:54 <jblaya> nribeka, here it is
03:39:56 <jblaya> /**
03:39:56 <jblaya> * Returns list of all the patients inside the given cohort.
03:39:56 <jblaya> * @param CohortDefinitionItemHolder
03:39:56 <jblaya> * @returns List<Patient>
03:39:56 <jblaya> */
03:39:58 <jblaya> @Override
03:40:00 <jblaya> public List<Patient> getPatientsInCohort(CohortDefinitionItemHolder c) throws PatientIdentifierException {
03:40:03 <jblaya> List<Patient> patients = new LinkedList<Patient>();
03:40:07 <jblaya> try {
03:40:09 <jblaya> Cohort cohort = cohortService.evaluate(c.getCohortDefinition(), null);
03:40:11 <jblaya> Set<Integer> memberIds = cohort.getMemberIds();
03:40:13 <jblaya> for (Integer i : memberIds) {
03:40:15 <jblaya> patients.add(Context.getPatientService().getPatient(i));
03:40:17 <jblaya> }
03:40:19 <jblaya> }
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03:40:21 <jblaya> catch (PatientIdentifierException e) {
03:40:23 <jblaya> log.error(e);
03:40:25 <jblaya> }
03:40:27 <jblaya> return patients;
03:40:29 <jblaya> }
03:40:31 <jblaya> sorry, forgot the pastebin, will give you the full java page now
03:41:04 <jblaya> nribeka, here it is http://pastebin.com/T4djtwNu , line 90 is the cause of the problem
03:43:57 <jblaya> Duc_, whose doing the programming isn't able to find the javadocs for the module or what function replaced the evaluate function since it's deprecated
03:48:47 <nribeka> what is the exception jblaya?
03:50:30 <jblaya> let me get it
03:50:33 <nribeka> the api is calling only core code (deprecated one)
03:51:14 <jblaya> ERROR - errorhandler_jsp._jspService(91) |2013-05-05 23:50:24,072| Error on page /midoctor/WEB-INF/view/module/midoctorpanel/portlets/midoctorHome.jsp
03:51:14 <jblaya> javax.servlet.jsp.JspException: java.lang.IllegalArgumentException: search must be saved, composition, or must have a class specified
03:52:00 <jblaya> nribeka, the error occurs when we call a sql filter saved patient search
03:52:11 <jblaya> the other types of filters work
03:52:16 <jblaya> so it's something specific to the sql filter
03:52:27 <jblaya> sunbiz, mentioend that it seems it's not creating a class
03:59:06 <nribeka> this class seems to be the one throwing the exception: PatientSearchCohortDefinitionProvider
03:59:22 <nribeka> line 57
03:59:34 <nribeka> so that cohortService.evaluate delegating it to this class
04:01:52 <Duc_> this class in which module?
04:01:55 <jblaya> nribeka, what line is that? because it's not 57 in the pastebin
04:02:43 <nribeka> in your pastebin, the one that throw exception is cohortService.evaluate ...
04:03:12 <nribeka> the cohortService.evaluate delegating the evaluation to PatientSearchCohortDefinitionProvider.evaluate
04:03:37 <nribeka> can you do: (in your module, before line 90)
04:04:10 <nribeka> CohortDefinition cd = c.getCohortDefinition();
04:04:39 <nribeka> if (cd instanceof PatientSearch) {
04:04:57 <nribeka> PatientSearch ps = (PatientSearch) cd;
04:05:40 <nribeka> System.out.println("PatientSearch: " + ps.toString());
04:05:42 <nribeka> }
04:06:03 <nribeka> could be your cohort definition is the problem jblaya hehehe ...
04:06:43 <jblaya> I have a feeling that the programmer who did the sql filter (who worked for me) didn't do something completelyl right
04:06:58 <jblaya> because the saved patient search does give a result in the cohort builder
04:07:27 <nribeka> better use reporting jblaya :)
04:08:09 <jblaya> nribeka, :D yeah, when we get a cohort builder that users like
04:08:24 <jblaya> so the code should look like this?
04:08:44 <jblaya> if (cd instanceof PatientSearch) {
04:08:44 <jblaya> PatientSearch ps = (PatientSearch) cd;
04:08:44 <jblaya> System.out.println("PatientSearch: " + ps.toString());
04:08:44 <jblaya> }
04:08:44 <jblaya>
04:08:45 <jblaya> try {
04:08:46 <jblaya> Cohort cohort = cohortService.evaluate(c.getCohortDefinition(), null);
04:08:48 <jblaya> Set<Integer> memberIds = cohort.getMemberIds();
04:08:51 <jblaya> for (Integer i : memberIds) {
04:08:53 <jblaya> patients.add(Context.getPatientService().getPatient(i));
04:08:55 <jblaya> }
04:08:56 <jblaya> }
04:09:02 <nribeka> yeah
04:09:21 <nribeka> something like that.
04:09:30 <jblaya> Duc_, I don't know if you understand the code, but I certainly don't
04:10:12 <nribeka> CohortDefinition cd = c.getCohortDefinition();
04:10:18 <nribeka> missing that line?
04:10:27 <jblaya> yeah, I saw it and placed it in
04:11:12 <jblaya> hmm, in the compilation it gives me this error: cannot find symbol
04:11:21 <Duc_> let's me try
04:11:38 <nribeka> basically the exception will happen (according to the code in core) when you don't set the filterClass in the PatientSearch class
04:11:56 <nribeka> so the stack trace for that one started from here jblaya
04:12:32 <nribeka> CohortService.evaluate
04:12:58 <nribeka> PatientSearchCohortDefinitionProvider.evaluate
04:13:22 <nribeka> OpenmrsUtil.toPatientFilter
04:13:40 <jblaya> so ti still gives the same error
04:13:49 <nribeka> this is the line where the exception started:
04:13:51 <nribeka> Class clz = search.getFilterClass();
04:13:51 <nribeka> if (clz == null)
04:13:51 <nribeka> throw new IllegalArgumentException("search must be saved, composition, or must have a class specified");
04:14:17 <nribeka> is it printing out the content of the cohort definition or no?
04:14:40 <jblaya> yep, here it is
04:14:41 <jblaya> PatientSearch: PatientSearch parsedComposition=
04:14:41 <jblaya> [PatientSearch filterClass=class org.openmrs.reporting.ObsPatientFilter (class org.openmrs.api.PatientSetService$TimeModifier)timeModifier=LAST (class org.openmrs.Concept)question=75 (class org.openmrs.api.PatientSetService$Modifier)modifier=EQUAL (class org.openmrs.Concept)value=146, AND, PatientSearch filterClass=class org.openmrs.reporting.ObsPatientFilter (class org.openmrs.api.PatientSetService$TimeModifier)timeModifier=LAST (class org.openmrs.Concep
04:14:41 <jblaya> t)question=7 (class org.openmrs.api.PatientSetService$Modifier)modifier=EQUAL (class org.openmrs.Concept)value=9]
04:14:43 <jblaya> NOT
04:14:45 <jblaya> PatientSearch
04:18:09 <nribeka> the last two part of it?
04:18:35 <jblaya> yeah, don't know why
04:18:42 <jblaya> actually
04:18:46 <jblaya> that's the problem there
04:18:55 <nribeka> yeah
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04:19:00 <jblaya> after the NOT there is the sql statement for that filter and it's not being written
04:19:09 <nribeka> the first clause seems to be correct
04:19:28 <nribeka> the PatientSearch only is not correct i think
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04:20:43 <jblaya> yep, here's the full definition of the patient search from the admin page
04:20:44 <jblaya> http://pastebin.com/h1d5UaPH
04:21:31 <jblaya> so for some reason the query in lines 172 on is not being placed into the patient search
04:22:08 <jblaya> funny ting is that the search does work in the cohort builder
04:22:54 <nribeka> hmmm the xml seems to be not getting deserialized correctly
04:23:05 <nribeka> how do you create the cohort definition jblaya?
04:23:14 <nribeka> reading xml file like this?
04:23:39 <jblaya> nop, I created a couple of obs searches, and then a sql search
04:23:47 <jblaya> then I composed them with composition
04:23:52 <jblaya> and the composition one I saved
04:23:55 <jblaya> the others I didn't
04:24:03 <nribeka> <void property="filterClass"><class>org.openmrs.module.reportingcompatibility.reporting.PatientSqlFilter</class></void>
04:24:07 <jblaya> the obs, sql searches that are the components
04:24:20 <jblaya> right
04:24:23 <nribeka> in the xml it is saved, but it's not in the class i think
04:24:50 <nribeka> that's why it's throwing the filterClass exception
04:25:30 <nribeka> this could be a bug
04:25:32 <nribeka> :D
04:25:38 <jblaya> yeah, it probably is
04:26:00 <nribeka> and they will ask you to switch to reporting hehehe ...
04:26:20 <nribeka> probably ask the dev list that way
04:26:20 <jblaya> well, the idea is that Duc_ will fix this bug and submit it
04:26:36 <nribeka> hahahahaha ... well that's good then :D
04:26:39 <jblaya> that's why I asked him to come onto the chat
04:26:59 <jblaya> yep, basically this was to help Duc_ figure out where the problem is so that he can fix it (hopefully tonight)
04:27:21 <jblaya> Duc_, don't know if you have any other questions about how to fix this?
04:27:43 <jblaya> nribeka, so this needs to be fixed in the reporting compatibility module, right? and not in our module
04:28:06 <nribeka> where did you get that xml jblaya?
04:28:21 <nribeka> the one that read and write that xml probably need to get fixed
04:28:40 <nribeka> report object table?
04:29:21 <jblaya> from the Manage Patient Searches in the administration page
04:30:04 <jblaya> http://localhost:8080/openmrsr/admin/reports/patientSearch.form?patientSearchIdLookup=21
04:30:44 <jblaya> In the admin page, its Reports -> Manage Patient Searches
04:31:31 <nribeka> i don't think it's your module jblaya
04:31:37 <nribeka> probably in core
04:32:10 <jblaya> nribeka, core or the reporting compatibility module?
04:32:40 <nribeka> i think it's going to core
04:32:48 <nribeka> nothing in the reporting compatibility module
04:33:30 <jblaya> any tips as to where, so that Duc_ can work on it?
04:35:12 <nribeka> jblaya: first find where that xml is stored (report_object) table
04:35:29 <nribeka> find how report_object table is being saved and retrieved as PatientSearch
04:35:38 <nribeka> update that patient search
04:36:39 <jblaya> ok, great, thanks, Duc_ do you have any more questions?
04:38:43 <jblaya> guess not, thanks nribeka, I think I've probably bugged you enough during this weekend
04:38:51 <Duc_> so now I will work on reporting compatibility
04:39:50 <jblaya> Duc_, actually what nribeka mentions is that you will probably have to work on the core code of openmrs https://github.com/openmrs/openmrs-core/
04:40:21 <Duc_> ok
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04:40:58 <Duc_> I will follow nribeka suggestions
04:42:43 <nribeka> jblaya: i don't see anything in this module: https://github.com/openmrs/openmrs-module-reportingcompatibility
04:42:52 <OpenMRSBot> <http://ln-s.net/-7gg> (at github.com)
04:45:09 <jblaya> nribeka, ok, great, it's actually better for us if it's in core because I've made some customization to hard coded translations in the rep comp
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04:48:15 <jblaya> nribeka, Duc_ , this looks promising api/src/test/java/org/openmrs/report/ReportSchemaXmlTest.java: xml2.append(" <cohort class=\"org.openmrs.reporting.PatientSearch\">\n");
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04:50:45 <jblaya> and these two api/src/test/java/org/openmrs/report/PatientSearchParameterTest.java: protected static final String INITIAL_REPORT_OBJECTS_XML = "org/openmrs/report/include/PatientSearchParameterTest.xml";
04:50:45 <jblaya> api/src/test/java/org/openmrs/report/PatientSearchParameterTest.java: * Tests {@link PatientSearch#getParameters()} to see if parameter names evaluate to a value
04:52:52 <jblaya> thanks nribeka for all of the help, I (and hopefully you) am going to sleep
04:53:33 <nribeka> yeah, look at the set and get for filterClass in the PatientSearch.java Duc_
04:54:10 <nribeka> try to put some debug message around that method. i think that method is throwing exception because the PatienSqlFilter is not available
04:54:24 <nribeka> i could be wrong and you could ask mseaton tomorrow morning :)
04:54:45 <Duc_> ok. thanks
04:55:08 <nribeka> @Attribute(required = false)
04:55:08 <nribeka> public Class getFilterClass()
04:55:39 <nribeka> using simpleframework api to read and write the xml :)
04:56:01 <nribeka> i'm out :) cya all tomorrow.
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07:17:31 <Lucy_Marie> hi hi hi
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07:27:34 <Lucy_Marie> ne1 here
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07:31:24 <harshadura> hi Lucy_Marie
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07:31:43 <Lucy_Marie> hi Hasintha_i
07:31:50 <Lucy_Marie> hi harshadura
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07:32:00 <Lucy_Marie> how are you today
07:32:11 <Lucy_Marie> hi k-joseph
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07:35:25 <k-joseph> Lucy_Marie: hi
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07:36:29 <Lucy_Marie> how are you k-joseph
07:38:09 <k-joseph> Lucy_Marie: ok, and how about you?
07:38:30 <Lucy_Marie> ok ish bit nervous but ok
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07:46:10 <Lucy_Marie> hi rday
07:47:36 <rday> Lucy_Marie: Hello
07:49:53 <Lucy_Marie> how are you rday
07:50:42 <rday> Lucy_Marie: I am alright, yourself?
07:54:12 <Lucy_Marie> i am ok a little nervous but ok
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10:29:16 <Hasintha_i> suranga, hi
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10:51:30 <suranga> Hasintha_i: howdy !
10:52:04 <Hasintha_i> suranga, done with your exams ? :-)
10:52:27 <suranga> Hasintha_i: well, most of them :P
10:52:27 <suranga> not all :)
10:52:42 <suranga> Hasintha_i: hows your schedule like ?
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10:54:02 <Hasintha_i> suranga, schedule is totally packed with work :D , btw when will be the deadline to resolve a ticket ?
10:54:37 <suranga> Hasintha_i: um, the sooner the better, actually :)
10:57:52 <suranga> Hasintha_i: I need to pop out for a while, be back soon (have to meet my supervisor :)
10:58:42 <Hasintha_i> suranga, ok , cu :)
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11:12:37 <dkayiwa> #hum-team
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11:23:23 *** rkorytkowski is now known as rafa
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11:35:31 <dkayiwa> hi rafa
11:35:44 <dkayiwa> rafa: Am hoping you had a nice weekend :)
11:35:52 <rafa> dkayiwa: hi
11:36:05 <rafa> dkayiwa: it was perfect thanks!
11:36:18 <rafa> dkayiwa: how was yours?
11:36:26 <dkayiwa> rafa: it was good too :)
11:37:06 <dkayiwa> rafa: do you think you will have some time today for some pair programming on #527
11:37:17 <dkayiwa> rafa: am too much a newbie in mirebalais :)
11:37:23 <rafa> dkayiwa: absolutely!
11:37:38 <dkayiwa> rafa: ok just tell me whenever you will be ready :)
11:37:41 <rafa> dkayiwa: will you have time in 20 minutes?
11:37:48 <dkayiwa> rafa: oh yes
11:38:10 <rafa> dkayiwa: I need to respond to a few e-mails
11:38:18 <rafa> dkayiwa: great
11:38:18 <dkayiwa> rafa: cool!!!
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11:57:30 <rafa> dkayiwa: I'm ready :)
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11:58:32 <dkayiwa> rafa: sorry i stepped on my modem :)
11:58:44 <dkayiwa> rafa: sure am ready too
11:59:05 <dkayiwa> rafa: did your team viewer also expire?
11:59:18 <rafa> dkayiwa: it works just fine
11:59:26 <rafa> dkayiwa: I use a free version
11:59:33 <dkayiwa> rafa: let me check mine
11:59:51 <rafa> dkayiwa: one that doesn't need an installation on Windows
12:00:00 <dkayiwa> rafa: oh :)
12:00:24 <rafa> dkayiwa: are you on skype?
12:00:45 <dkayiwa> rafa: i can get there too :)
12:00:56 <rafa> dkayiwa: great
12:04:16 <dkayiwa> rafa: i have TeamViewer running
12:04:59 <rafa> dkayiwa: I sent connection details on skype
12:05:08 <dkayiwa> rafa: ok
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14:01:52 <rafa> dkayiwa: let me know how things are going
14:02:03 <dkayiwa> rafa: still building :)
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14:03:08 <dkayiwa> rafa: too many saveConceptReferenceTerm going on in the logs :)
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14:12:06 <cpower> Morning everyone ready to scrum
14:12:07 <cpower> ?
14:12:18 <cpower> Silence is golden
14:12:24 <cpower> !scrumon cpower
14:12:24 * OpenMRSBot says the DAILY SCRUM MEETING is STARTING. This meeting should not last longer than 15 minutes. Please hold other comments until the end of the meeting, or message someone privately. Thank you! ScrumMaster cpower- you may begin when ready.
14:13:10 <cpower> Order: mseaton , rafa , breeze , dkayiwa , wyclif
14:13:38 <mseaton> nothing of note to report here.
14:15:03 <cpower> ok rafa: you are up
14:15:18 <rafa> Today:
14:15:18 <rafa> * Paired with Daniel on mirebalais setup
14:15:18 <rafa> * Worked on improving #524 Spike on refactoring custom displays for different encounter types
14:15:18 <rafa> No blockers.
14:17:58 <wyclif> ?
14:18:02 <cpower> breeze: any updates?
14:18:02 <dkayiwa> Paired with Rafal on getting my mirebalais setup
14:18:03 <dkayiwa> Now running mirebalais again with all the modules (It is taking too long though :)
14:18:03 <dkayiwa> No Blockers
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14:18:55 <wyclif> dkayiwa: to make it faster you need to comment out the code in the started and contextRefreshed methods of the activators of emr and mirebalais modules
14:19:09 <wyclif> dkayiwa: it is what slows it down
14:19:16 <dkayiwa> wyclif: ok thanks wyclif :)
14:19:33 <cpower> ok wyclif
14:19:36 <cpower> go
14:19:41 <wyclif> Thursday:
14:19:42 <wyclif> -dev call
14:19:43 <wyclif> -review and apply pull requests for TRUNK-2436, TRUNK-2651, TRUNK-2768
14:19:45 <wyclif> -Went through relatively old pull request to ping devs assigned to them
14:19:46 <wyclif> Friday:
14:19:48 <wyclif> -Had no internet connection in the morning-mid morning, had to go IU to be able to reset passphrase to be able to use UI secure
14:19:49 <wyclif> -Reviewed TRUNK-3979, Trunk 2873
14:19:51 <wyclif> -Reviewed and applied TRUNK-3567
14:19:52 <wyclif> Monday:
14:19:54 <wyclif> -More reviews
14:19:55 <wyclif> -Pick up a ticket
14:19:56 <wyclif>
14:19:57 <wyclif> Blockers: None
14:22:01 <dkayiwa> wyclif: and how do we change this language to English? :)
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14:23:07 <wyclif> dkayiwa: choose the legacy OpenMRS app and choose it from the footer
14:23:29 <wyclif> dkayiwa: there might be a GP too
14:24:20 <dkayiwa> wyclif: ok thanks
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14:29:33 <cpower> !scrumoff
14:29:33 * OpenMRSBot says the DAILY SCRUM MEETING has ENDED. This channel is now returned to normal hacking operations. Post-scrum meeting follow-up conversations may now begin.
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17:34:23 <jkeiper> mseaton: have you ever had to create a column in a report that was just an incrementing value starting at 1?
17:34:35 <jkeiper> mseaton: like, the number of the row in a spreadsheet ...
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17:35:02 <jkeiper> mseaton: i'm not sure if that's even worth doing in the report but it's a requirement in the MOH register
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17:40:55 <GitHub153> [openmrs-core] wluyima pushed 1 new commit to master: http://git.io/pXPHgw
17:40:55 <GitHub153> openmrs-core/master 6c26027 Robert Day: Location hierarchy should not allow loops, description should not be required - TRUNK-2707...
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17:46:54 <GitHub99> [openmrs-core] wluyima pushed 1 new commit to 1.9.x: http://git.io/Ys6XJQ
17:46:54 <GitHub99> openmrs-core/1.9.x eb72811 Robert Day: Location hierarchy should not allow loops, description should not be required - TRUNK-2707...
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17:52:25 <GitHub57> [openmrs-core] wluyima pushed 1 new commit to 1.8.x: http://git.io/rK-YBQ
17:52:25 <GitHub57> openmrs-core/1.8.x 2983879 Robert Day: Location hierarchy should not allow loops, description should not be required - TRUNK-2707...
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17:53:15 <travis-ci> [travis-ci] [openmrs/openmrs-core] [6c26027] [Robert Day] The build passed. - http://travis-ci.org/openmrs/openmrs-core/builds/6930375
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17:53:18 <OpenMRSBot> <http://ln-s.net/-7sP> (at travis-ci.org)
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19:14:49 <OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Modules: HTML Form Flowsheet 1.2.6 uploaded to OpenMRS Module Repository <https://modules.openmrs.org/modules/view.jsp?module=htmlformflowsheet&ampversion=&amp1.2.6>
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19:15:39 <GitHub59> [openmrs-core] wluyima pushed 1 new commit to 1.7.x: http://git.io/NqCXLg
19:15:39 <GitHub59> openmrs-core/1.7.x aec1701 Robert Day: Location hierarchy should not allow loops, description should not be required - TRUNK-2707
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22:21:50 <rday> wyclif: Hi
22:28:07 <wyclif> rday: hi
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22:29:25 <rday> wyclif: TRUNK-2119 is done and committed
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23:51:46 <wyclif> rday: cool, i have added a comment with a request, where are you committing the code?
23:53:27 <rday> wyclif: Pull request is here https://github.com/openmrs/openmrs-core/pull/302
23:53:28 <OpenMRSBot> <http://ln-s.net/-6QC> (at github.com)
23:54:09 <wyclif> rday: how may pull requests did you make?
23:54:20 <rday> wyclif: just the original one
23:54:42 <wyclif> rday: i see 295, 305 and now 302
23:55:42 <rday> wyclif: I had issues with Git including other peoples commits so that is what 295 was. It is closed,
23:56:19 <rday> wyclif: where do you see 305 from?
23:56:28 <wyclif> rday: so there was someone else who worked on it right?
23:57:17 <rday> wyclif: Yes Gurpeet Luthra did the original work I just changed all the text to include localization