IRC Chat : 2012-02-24 - OpenMRS

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04:37:24 <suranga> mm... guys, is the server down... I cant seem to access the wiki
04:37:25 <suranga> :(
04:51:22 <bwolfe> suranga, http://status.openmrs.org
04:51:49 <suranga> sorry bwolfe , i kep forgetting that link :(
04:51:55 <suranga> *keep
04:52:34 <bwolfe> no worries
04:52:56 <bwolfe> suranga, the other cool on is something like http://downforeveryoneorjustme.com
04:53:02 <bwolfe> and with that I'm off to bed
04:53:03 <bwolfe> g'night
04:53:10 <djazayeri> gnight
04:53:10 <suranga> goodnight ben
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04:53:15 <suranga> seee you tomorrowww
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14:35:45 <sgithens> Are the config and manifest files inside .omad bundles something we made up, or do they follow a 'module loading' spec of some kind that there is a library for that we use?
14:48:47 <chopin_> s/omad/omod
14:48:53 <chopin_> hi sgithens (jkeiper here)
14:49:25 <chopin_> sgithens, and i think the omod is just a jar, really ... bwolfe will be able to tell you more about that
14:50:44 <sgithens> chopin_: Yeah, I unzipped it, just curious if all the configuration schemas are part of a standard Spring 'module' system, or if we made them up
14:51:06 <sgithens> good to know your handle :p
14:53:32 <chopin_> sgithens, ah. not sure about that, but we do have a service for loading modules that you can look at ...
14:55:10 <bwolfe> sgithens, made them up
14:55:18 <bwolfe> our modules were before spring modules
14:55:30 <sgithens> bwolfe: cool, thx
14:56:09 <bwolfe> and even before osgi
15:00:28 <bwolfe> scrum time djazayeri, rafa, dkayiwa
15:00:49 <dkayiwa> hi bwolfe
15:01:06 <rafa> I'm here :)
15:01:15 <djazayeri> hi
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15:02:51 <wyclif> sorry guys, apparently my clock was off by about 3-4 min
15:02:53 <bwolfe> (and now wyclif)
15:03:01 <djazayeri> !scrumon bwolfe
15:03:01 * OpenMRSBot says the DAILY SCRUM MEETING is STARTING. This meeting should not last longer than 15 minutes. Please hold other comments until the end of the meeting, or message someone privately. Thank you! ScrumMaster bwolfe- you may begin when ready.
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15:03:15 <bwolfe> alphabetical order today
15:03:40 <djazayeri> bwolfe, djazayeri, dkayiwa, rafa, wyclif
15:03:54 <rafa> djazayeri: that's helpful :D
15:03:54 <bwolfe> today:
15:03:54 <bwolfe> upgraded mvp to 1.9.x to work on TRUNK-3068
15:03:54 <bwolfe> reviewed trunk tickets for daniel
15:03:54 <bwolfe> cleaned out some old reviews
15:04:19 <bwolfe> c'mon, djazayeri, I was testing how well you all could pay attention!
15:04:54 <djazayeri> Well, I didn't realize that was your whole report. :-)
15:04:55 <djazayeri> blockers?
15:05:10 <djazayeri> oh, you mean the alphabetical order thing...
15:05:12 <bwolfe> sorry, yes, slow morning. stuck on upgrading andy's silly db
15:05:25 <bwolfe> had a strnage error, now am trying to delete obs so that the upgrade will finish before monday :-p
15:05:42 <rafa> bwolfe: it wasn't that long for me...
15:05:50 <dkayiwa> bwolfe: i tried upgrade mine and it took so long that i cancelled it :)
15:06:05 <bwolfe> rafa, you still have the 6 mil obs?
15:06:19 <rafa> bwolfe: nope just andy's :P
15:06:30 <rafa> bwolfe: I mean the concept dict
15:06:31 <dkayiwa> aha, i think i was dealing with the pentaho MVP db :)
15:06:40 <bwolfe> same
15:06:51 <rafa> bwolfe: don't go that path :P
15:07:07 <djazayeri> ah, FWIW, the pentaho dictionary is a bit of a frankenstein that involves some deidentification done by andy + some splicing done by gretchen
15:07:49 <djazayeri> It's of limited use as a test-case, since I don't think it's actually correct.
15:08:05 <rafa> bwolfe: I'd really recommend to do it only on the MVP concept dict
15:08:08 <bwolfe> good, then I will delete the obs table
15:08:27 <djazayeri> Okay, my report:
15:08:32 <djazayeri> Thursday 23-Feb-2012
15:08:32 <djazayeri> * Dev call
15:08:32 <djazayeri> * Leadership call
15:08:32 <djazayeri> * Call with Andy, Ben, and Bruce about openmrs-motech integration
15:08:32 <djazayeri> * Review lots of tickets
15:08:33 <djazayeri> ** Reviewed TRUNK-57
15:08:33 <djazayeri> ** Reviewed TRUNK-2273
15:08:34 <djazayeri> ** Reviewed TRUNK-2240
15:08:34 <djazayeri> ** Reviewed/followup commit for TRUNK-3055
15:08:35 <djazayeri> ** Fixed & closed TRUNK-3033
15:08:35 <djazayeri> ** Reviewed TRUNK-2198
15:08:36 <djazayeri> ** Added unit test and closed TRUNK-2589
15:08:37 <djazayeri> Friday 24-Feb-2012
15:08:37 <djazayeri> * Review more 1.9 tickets, if there are any left
15:08:38 <djazayeri> * Release the Reporting REST module as alpha
15:08:38 <djazayeri> * ???
15:09:11 <dkayiwa> Reviewed, tested and closed: Add initialization/update wizard messages for languages other than english - TRUNK-3001
15:09:11 <rafa> motech?
15:09:11 <dkayiwa> Reviewed and tested: Small fixes for newpatient.form - TRUNK-198
15:09:11 <dkayiwa> Back ported to 1.9.x: Avoid Duplicate Rows in Patient_State Table - TRUNK-2273
15:09:12 <dkayiwa> Back ported to 1.9.x: Fix validation logic for Openmrs Objects in controllers - TRUNK-3002
15:09:12 <dkayiwa> Back ported to 1.9.x a commit for: AuditableInterceptor fails with a NPE at startup if there are scheduled tasks to run at startup - TRUNK-2903
15:09:12 <dkayiwa> Back ported to 1.9.x and closed: Implement voiding of PersonNames - TRUNK-2198
15:09:13 <dkayiwa> Back ported to 1.9.x: Determine correct length for datatype and handler config hibernate properties - TRUNK-3029
15:09:13 <dkayiwa> Back ported to 1.9.x: Add logging table for merged patients - TRUNK-37
15:09:13 <dkayiwa> Back ported to 1.9.x: JspException thrown on clicking the Visits category under settings - TRUNK-3055
15:09:13 <dkayiwa> No Blockers
15:09:25 <rafa> Today:
15:09:25 <rafa> * Finished TRUNK-3069: Rename AdministrationService.validateInManualFlushMode, and refactor it and ValidateUtil
15:09:25 <rafa> https://tickets.openmrs.org/browse/TRUNK-3069
15:09:25 <rafa> * Committed TRUNK-3057: Creating concept mappings fails with legacy code
15:09:25 <rafa> https://tickets.openmrs.org/browse/TRUNK-3057
15:09:26 <rafa> * Picked up STAND-36: Automatically create MVP/CIEL dictionary-based dataset as part of the standalone build process
15:09:26 <rafa> https://tickets.openmrs.org/browse/STAND-36
15:09:27 <rafa> No blockers.
15:09:43 <wyclif> yesterday:
15:09:43 <wyclif> * dev call
15:09:43 <wyclif> * Completing work on datebased results
15:09:43 <wyclif> * TODOs for TRUNK-3001 - Add initialization/update wizard messages for languages other than english
15:09:43 <wyclif> * TRUNK-198 - Small fixes for newpatient.form
15:09:43 <wyclif> today:
15:09:45 <wyclif> * TRUNK-3049 - UGLY screen in init wizard
15:09:47 <wyclif> * Create tickets for pending tasks for logic 2.0 module
15:09:49 <wyclif> * Create wiki page for developer documentation for logic 2.0 module
15:09:51 <wyclif> Blockers: none
15:10:31 <wyclif> dkayiwa, i made a fix for TRUNK-198, thanks for figuring that out with me
15:10:31 <djazayeri> you all need to paste your reports a bit more slowly :-)
15:10:45 <rafa> djazayeri: use scroll :P
15:11:00 <djazayeri> yeah, but I don't believe you read dkayiwa's report before you pasted yours. :-P
15:11:01 <bwolfe> haha
15:11:15 <dkayiwa> :D
15:11:25 <rafa> djazayeri: okay you got me :P
15:12:16 <bwolfe> worlds fastest reader...
15:12:23 <djazayeri> rafa: motech is a project by the Grameen Foundation "Mobile Technology for Community Health"
15:12:40 <djazayeri> (also by Columbia University)
15:12:45 <wyclif> do you guys still get notifications from jira e.g about tickets comments, status changes etc, because i dont
15:12:46 <bwolfe> they have some mobile clients and their own server of sorts
15:12:49 <rafa> djazayeri: thx just googled it ;)
15:12:59 <bwolfe> wyclif, as of when?
15:13:07 <wyclif> its bee a while
15:13:16 <wyclif> probably the whole of this week
15:13:27 <rafa> I do get them
15:13:58 <djazayeri> Yeah, I'm getting them (and tons of them with dkayiwa closing all these tickets...)
15:14:01 <wyclif> forinstance someone closed TRUNK-3001 and i got no notification
15:14:25 <wyclif> may be i changed my email setting my mistake and they are being moved to junk
15:14:32 <djazayeri> that said, I sometimes feel like I don't get *all* the JIRA emails. Sometimes I'll get a Closed without a Comment, or vice versa.
15:14:52 <wyclif> and you all still get svn updates?
15:15:06 <wyclif> because i dont get those either
15:15:18 <bwolfe> what do you mean by svn update?
15:15:34 <djazayeri> !scrumoff
15:15:34 * OpenMRSBot says the DAILY SCRUM MEETING has ENDED. This channel is now returned to normal hacking operations. Post-scrum meeting follow-up conversations may now begin.
15:15:37 <bwolfe> yes, I seem to lose some jira emails as well. but is mainly in the ITSM project
15:15:42 <bwolfe> ah yes, thanks for the scrumoff
15:16:05 <wyclif> i have noticed they are in junk
15:16:19 <wyclif> hmm, i wonder how i set this
15:17:46 <djazayeri> dkayiwa: do you have the "tickets that need to be closed to release 1.9 RC" jira query/filter?
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15:19:57 <djazayeri> oops, lost dkayiwa
15:21:28 <djazayeri> bwolfe, wyclif, rafa: any discussion points?
15:21:55 <rafa> djazayeri: I don't finish with STAND-36 before the RC.
15:22:05 <rafa> djazayeri: I guess it shouldn't be a problem
15:22:19 <rafa> djazayeri: if the RC is supposed to go out today.
15:22:26 <djazayeri> rafa: I think STAND-36 is arguably a blocker for the RC
15:22:42 <djazayeri> when do you think it'll be done?
15:23:25 <djazayeri> I guess that in theory we could release an RC without the MVP dictionary, and then rebuild just the standalone when we do the real release...
15:23:27 <rafa> djazayeri: It depends if we want to have all concepts valid or it's okay to have some invalid
15:23:41 <djazayeri> rafa: gotta get them valid.
15:23:47 <djazayeri> how many are left?
15:23:56 <djazayeri> and is it something that you have to do, or can be parallelized?
15:24:22 <rafa> djazayeri: I got an updated dict from Andy that I need to validate again
15:24:56 <rafa> djazayeri: I don't know what will be the result
15:25:17 <djazayeri> ah, and that's going to take a full day to run the validation, right?
15:25:40 <rafa> djazayeri: not I tweaked the validation tool so it's a few hours now
15:26:18 <rafa> djazayeri: but the dict I got from Andy has some references to non existing users
15:26:29 <rafa> djazayeri: I need to clean it up
15:27:05 <djazayeri> rafa: yeah, do something like: update concept* set creator|changed_by = 1 where creator|changed_by is not null
15:27:37 <djazayeri> rafa: anyway, so I imagine you'll leave the tool validating when you stop working for the day?
15:27:38 <rafa> does * work?
15:27:44 <djazayeri> no
15:27:48 <rafa> :(
15:27:49 <djazayeri> I wish it did
15:27:53 <rafa> me too
15:27:58 <sgithens> What do these '^99DCT' suffixes on openmrs_concept attributs in xform definitions signify?
15:28:11 <rafa> djazayeri: yes, that's the plan
15:28:40 <djazayeri> rafa: okay, once you've got the list of SQL commands for this, can you put them on the wiki
15:29:08 <rafa> djazayeri: cool
15:29:20 <djazayeri> make a "Helpful SQL scripts" page
15:30:33 <djazayeri> rafa: anyway, send an email tomorrow morning just summarizing the outcome of the validation
15:30:38 <djazayeri> and we'll figure out where to go from there
15:30:51 <djazayeri> I guess it's okay to release the RC without the MVP dictionary, but not the final release
15:31:34 <djazayeri> sgithens: It means that the naming authority is "99DCT", where I think the 99 is the prefix for "other" or "user-defined", and DCT is short for "Dictionary"
15:33:48 <sgithens> djazayeri: Ah. So, in the event that two different installations had different concept ID's for the same thing because they were using a different naming authority, you could eventually go back and map similar concepts between naming authorities and eventually link them back up?
15:33:58 <djazayeri> sgithens: well, no
15:34:46 <djazayeri> sgithens: my concept ID #1 is likely different from yours, and if you somehow submitted an xform constructed on your server to my server, that would be bad
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15:35:04 <r4friedman> nick r.friedman
15:35:25 <r4friedman> bwolfe: hi ben, got a minute?
15:36:08 <bwolfe> r4friedman, maybe even 2 minutes
15:36:16 <r4friedman> great
15:36:35 <r4friedman> i was looking at order/drugorder, in which you and djazayeri had a hand
15:36:55 <r4friedman> it seems to me that ordertype is acting sort of like a discriminator
15:36:56 <djazayeri> r4friedman: new design, or existing?
15:37:01 <r4friedman> existing
15:37:16 <r4friedman> so get/setordertype oughtn't act the usual way
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15:37:28 <bwolfe> what do you mean usual way ?
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15:37:43 <r4friedman> take what's sent and stuff it in there
15:37:48 <sgithens> djazayeri: Is the naming authority responsible for actually maintaining the Id's and UUID's for their dictionary of concepts? I guess I'm assuming their role is to maintain their specific concept dictionary.
15:38:42 <r4friedman> because once it's saved, there will be consequences for the subclass tables
15:38:43 <djazayeri> (sorry, I accidentally quite IRC so I missed a few messages. r4friedman, what did you say between "so get/setordertype oughtn't" and "take what's sent..."?
15:39:00 <r4friedman> djazayeri: also u missed sgithens long piece
15:39:32 <bwolfe> r4friedman, if we're defining that in hibernate, then yes, its a bigger deal
15:39:40 <r4friedman> setordertype oughtn't work if the object is a subclass of order because of the consequences
15:39:50 <bwolfe> with concepts/concept_numeric, hibernate actually looks for a row in concpet_numeric, iirc
15:40:19 <djazayeri> sgithens: the specific naming authority of "99DCT" is a bit of a hack that means "my local dictionary". If we were saying "SNM" (e.g. snomed), that's a reference to a real naming authority. 99DCT isn't _really_ a naming authority.
15:41:23 <r4friedman> bwolfe: so you are saying that Hibernate knows that ID x is a drugorder even if you do setobjecttype=(DIETORDER)
15:41:28 <sgithens> djazayeri: Nice. :) These naming authorities are a general medical thing though right? Not just for OpenMRS, you might use a particular naming authority for any number of medical systesm to denote concepts?
15:41:50 <bwolfe> r4friedman, if I'm remembering right, yes. let me look at the mappings real quick
15:42:55 <djazayeri> sgithens: well, that's the theory. There are "authorities" for different things. SNOMED and ICD for concepts.
15:43:08 <bwolfe> r4friedman, looking at Order.hbm.xml, the descriminator is not set to the order type
15:43:20 <djazayeri> Someone might have a registry of providers, locations, etc, that's published as an authority
15:43:30 <djazayeri> sgithens: HL7 lets you refer to those things
15:43:37 <r4friedman> bwolfe: right, it was autogenerated -- but it doesn't matter per hibernate manual
15:43:52 <bwolfe> r4friedman, so if you tell hibernate to print out its queries and then do a GET on an order, you will see it doing a lookup to know if there is a row in drug_order with the same id
15:44:06 <djazayeri> sgithens: but (for now) OpenMRS only supports HL7 messages referring to your local dictionary
15:44:20 <sgithens> djazayeri: Ah, ok.
15:44:39 <r4friedman> i think problem is other direction. If ordertype=DRUG then there is a drugorder table with the drugorder fields
15:44:44 <djazayeri> sgithens: though given that we support concept mappings, it would be doable to handle concept codes from another authority
15:44:54 <r4friedman> bwolfe: that is, if I created a drugorder
15:45:37 <r4friedman> but if i then change it to laborder, then i try to do laborder methods and there is no laborder record
15:46:32 <r4friedman> bwolfe: of course, there is isDrugOrder, but that's only good for drug orders and can't change
15:47:35 <r4friedman> bwolfe: i guess you could do something like mysteryOrder.class.getName() or whatever the right method is
15:47:44 <sgithens> So, should it be possible to create an entire form from scratch (or by duplicating Basic) right now usign the GWT XForm Designer? I'm sort going through the corresponding xform xml from a big existing form, and comparing it with the UI trying to figure out how to set various things.
15:48:13 <djazayeri> sgithens: yeah, you should definitely use the designer to build your xform
15:48:25 <bwolfe> r4friedman, correct, we need a way to clean out the drug_order table row and create a lab_order row. the concept/conceptNumeric has special logic for this
15:48:46 <bwolfe> sgithens, wouldn't htmlformentry be easier for you? why are you using xforms?
15:49:10 * bwolfe wants all AMPATH forms to be turned into htmlforms (instead of infopath forms and/or xforms)
15:50:06 <r4friedman> bwolfe: of course the idea is you can't change orders once they're ordered, you can only discontinue them and write a new one
15:50:41 <sgithens> bwolfe: I think we're using XForm for our other forms. Also... I don't know, it seems like just pumping stuff into HTMLforms lacks some of the rigor and spec you might get from XForms?
15:50:44 <r4friedman> bwolfe: but maybe we could allow an order to be deleted before it's persisted
15:53:30 <r4friedman> bwolfe: if i do getOrder(x) and x is a drug order, I get an object with data elements from both parts, right?
15:53:51 <sgithens> bwolfe: I'm happy to try them both for this first form though.
15:54:26 <r4friedman> bwolfe: there's no way I can do something like (Order) getOrder(x) and just get the order part
15:54:40 <bwolfe> sgithens, I looked at the form with ada. looks pretty small. doing it in both seems doable. :-)
15:54:57 <r4friedman> sgithens: twice the progress
15:55:20 <bwolfe> r4friedman, I don't remember hte old api. but yes, since DrugOrder extends Order, when you get back a DrugOrder you can be guaranteed it is an Order as well
15:55:46 <sgithens> bwolfe: Yeah, it'll be a good way to get familier with them both. I'm not necessarily a huge fan of sprawling w3c xml specs, but it seems like there is useful tooling their for folks that don't spend all day in a text editor. :)
15:55:47 <bwolfe> sgithens / r4friedman: Why do it once when you can do it twice at double the cost (time).
15:56:01 <sgithens> s/their/there/
15:56:19 <r4friedman> bwolfe: yeah, but I'm trying to make sure that you can't get just the order and mung the order type if the subclass doesn't want you to
15:57:20 <bwolfe> r4friedman, I THINK, if you cast something to an Order and call setOrderType() it will still call DrugOrder.setOrderType first (if it exists)
15:58:12 <r4friedman> bwolfe: my logic too. why did you decide that the drugorder constructor would not set the order type?
15:58:54 <bwolfe> is that order type available?
15:59:08 <bwolfe> we didn't start hard coding *types until recently
15:59:28 <r4friedman> bwolfe: probably would need to become a global property or a "known" value like yes/no
16:01:20 <bwolfe> rafa, which patient did you use?
16:01:28 <bwolfe> (for the slow-to-load-dashboard)
16:01:33 <bwolfe> r4friedman, bleh
16:01:48 <rafa> bwolfe: I didn't have any
16:01:52 <OpenMRSBot> Recent updates in the world of openmrs: On Twitter: OpenMRS: @cdparra Thanks for taking a look! #OpenMRS <http://twitter.com/OpenMRS/statuses/173072335325237248>
16:01:53 <rafa> bwolfe: I used newly created
16:01:55 <bwolfe> I wish we had a better way of doing things like this. just feels wrong, but we don't have a better way
16:02:24 <bwolfe> rafa, loading takes 4 seconds for me. and thats with concept name updating happening in the bg
16:02:46 <rafa> bwolfe: that's good I guess
16:02:53 <rafa> bwolfe: it must be something with my db
16:03:06 <r4friedman> bwolfe: yah, too bad the original programmers are still working here, otherwise we could blame them
16:03:36 <r4friedman> bwolfe: although we surely can blame burke
16:05:04 <bwolfe> its always easy to blame burke...
16:05:59 <bwolfe> (and occasionally accurate)
16:09:22 <djazayeri> rafa: can you run with the debugger and see *which* concepts are being looked up by name?
16:09:39 <djazayeri> and then check whether there are any dashboard-related global properties with those names?
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16:41:49 <suranga> hi james_regen
16:42:37 <djazayeri> rafa: when was the last time you presented MDS on the dev call or the Implementers call?
16:43:20 <rafa> djazayeri: at the end of december
16:54:04 <james_regen> suranga: hi
17:03:55 <djazayeri> bwolfe: any thoughts about things that need fixing before releasing alpha of the Reporting REST module?
17:04:08 <djazayeri> We need to make sure the hrefs are right.
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17:17:51 <mnunez> Hi everyone!
17:19:14 <mnunez> rafa: have you noticed that when in the MDS, the size of the navigation bar changes? Fonts get bigger, at least in both my OMRS versions.
17:19:46 <mnunez> rafa: In one of them, I have so many modules installed that the navigation bar actually disappears.
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18:06:51 <bwolfe> djazayeri, check the TODOs in the code
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18:20:47 <djazayeri> bwolfe: will do
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18:37:15 <OpenMRSBot> Recent updates in the world of openmrs: On Twitter: OpenMRS: Video: #OpenMRS co-founder @pbiondich speaks on #HealthIT in underserved populations http://t.co/nZ2H1tqT #ICT4D #eHealth <http://twitter.com/OpenMRS/statuses/173108599277621248>
18:57:53 <wyclif> hi ben
18:58:02 <wyclif> hi bwolfe
19:01:35 <sgithens> oh i see, there is a wysiwyg editor the html forms too
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19:07:46 <mvorobey> hi all
19:14:40 <mnunez> rafa: Do you have a minute?
19:14:50 <mnunez> mvorobey: hi
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20:37:18 <wyclif> hi rafa
20:37:31 <wyclif> did you back port TRUNK-3057?
20:42:47 * downey hears the BP word and covers his ears
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20:53:02 <downey> Hi mvorobey_ and welcome to the #openmrs IRC channel.
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