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<OpenMRSBot> Recent updates in the world of openmrs: New Changeset: OpenMRS trunk #18261: [Wyclif Luyima] Adding tabs for duplicate patients as follow up to: Add mergePatients method that takes in multiple patients - TRUNK-35 <http://feedproxy.google.com/~r/OMRStrunk/~3/5AO4LqGq0vo/> || New Changeset: OpenMRS trunk #18260: [Ben Wolfe] When a concept is retired through the web interface, retired_by, date_retired and retire_reason are NULL in database concept table - TRUNK-1638 Author: goutham <http://feedproxy.google.com/~r/OMRStrunk/~3/B_jMKbO7E5M/>
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Forum: Missing patient identifier in PID segment <http://forum.openmrs.org/viewtopic.php?f=10&t=750#p2860>
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<bwolfe> dkayiwa: can we get the standalone installer renamed?
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13:44:24
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<dkayiwa> no problem
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13:44:34
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<dkayiwa> like to what name?
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13:44:39
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<bwolfe> would love it to match the version that is being released
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13:44:59
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<bwolfe> so the standalone for 1.8 rc would be: openmrs-standalone-1.8-rc.jar
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<dkayiwa> oh i see
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<bwolfe> and then when we release it would be openmrs-standalong-1.8.0.jar
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<dkayiwa> makes perfect sense
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13:47:09
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<bwolfe> dkayiwa: so now to "release" this, I would just zip up database, tomcat, runtime properties, and standalone...jar ?
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<dkayiwa> perfect
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<bwolfe> dkayiwa: oh, and the standalone thing worked for me!
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<bwolfe> I had to redo it once because I messed up the database user, but then loaded up and worked! :-)
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<bwolfe> good work!
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<dkayiwa> oh thanks
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14:11:07
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<dkayiwa> was scared of bugs :)
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<bwolfe> I haven't tried the jar file that loads up though
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14:12:19
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<bwolfe> the gui
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14:12:24
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<bwolfe> I just did the commandline
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<dkayiwa> oh i see
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14:12:46
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<dkayiwa> was even more scared of the commandline
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14:12:48
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<bwolfe> can you add some text around the openmrs logo? like "Starting OpenMRS" (or add that into the gif)
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<dkayiwa> yes i realized that too
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Forum: Re: Missing patient identifier in PID segment <http://forum.openmrs.org/viewtopic.php?f=10&t=750#p2861> || New Changeset: OpenMRS trunk #18266: [Ben Wolfe] Fixing unit tests for TRUNK-1995 <http://feedproxy.google.com/~r/OMRStrunk/~3/ev4N5nArePE/>
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<slackell> hi
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15:21:39
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<slackell> I'm having problems using the virtual appliance, can someone help me?
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15:22:57
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<slackell> When I start it in virtualbox it use to load up saying go to 10.0.2.15 and when I go to there I get problem loading page. Now it just says not starting as we're not in a vm and the goto message no longer appears.
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<slackell> Hi gbastien
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15:25:45
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<slackell> Can you help me?
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15:26:54
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<bwolfe> slackell: are you saying 10.0.2.15 is the ip displayed at vm startup?
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15:27:35
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<slackell> yeah
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<slackell> hi bwolfe
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<bwolfe> whats your host os?
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<slackell> Ubuntu 10.04
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15:28:08
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<bwolfe> whats your host ip?
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15:28:24
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<slackell> 192.168..
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15:29:05
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<slackell> i tried to manually set the host ip to match the vm one to be in the same network but it still didn't work.
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15:29:35
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<slackell> Just deleted the vm and going to reinstall to retry.
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<bwolfe> ok
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<bwolfe> let me know when thats up again
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15:30:56
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<bwolfe> did you follow all the instructions at the vm appliance wiki page slackell ?
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<bwolfe> http://wiki.openmrs.org/display/RES/OpenMRS+Appliance
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<OpenMRSBot> <http://ln-s.net/8V45> (at wiki.openmrs.org)
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<slackell> yeah
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<slackell> even did the run from terminal vmmodify
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<slackell> reinstalled got the message "not starting as we're not running in a vm" during boot. But I have the goto 10.0.2.15:8080/openmrs to begin
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15:35:46
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<slackell> entering openmrs in login prompt and going to browser in host to enter address given
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15:36:52
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<slackell> connection timed out. I have a shell prompt in vm.
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15:40:35
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<bwolfe> slackell: not sure what that "not starting as.." stuff is
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15:40:40
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<bwolfe> I'm not a huge user of the vm appliance
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15:41:34
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<slackell> I just want to try it out. See what the software does so I figured vm would be easier than installing on host machine.
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15:42:05
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<slackell> I'm changing the ip address of the vm to match host subnet.
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15:42:50
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<slackell> getting unable to connect
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15:46:02
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<bwolfe> slackell: which vm are you using?
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15:47:00
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<slackell> OpenMRS_1.7.0.vmwarevm.7z is what I downloaded. Running it in virtualbox
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15:58:07
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<slackell> vm network info is ip 192.168.1.15 its in the same subnet as host, its gateway is the host ip.
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<slackell> destination 0.0.0.0 gateway host ip
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<slackell> destination 192.168.1.15 gateway 0.0.0.0
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<bwolfe> slackell: you're past my expertise with the vm stuff
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16:00:38
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<bwolfe> there are a bunch of users of it on the dev and implementer lists. I'd suggest writing to one of those
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<bwolfe> http://wiki.openmrs.org/display/RES/Mailing+Lists
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<OpenMRSBot> <http://ln-s.net/7WAS> (at wiki.openmrs.org)
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16:01:14
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<slackell> oh well, thanks for the help. If this doesn't work I'll have no choice but to install on host.
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<slackell> I'll send them a message just in case its a bug or something
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<slackell> Somehow I've managed to get it to work.
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<slackell> I made some changes using modifyvm but after a power off vm and set networking to bridge, i can access it.
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Forum: Re: Missing patient identifier in PID segment <http://forum.openmrs.org/viewtopic.php?f=10&t=750#p2862>
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<jholmes> Good morning alll! Anyone successful running OpenMRS on Tomcat6 and Ubuntu 10.10?
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17:14:21
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<jholmes> I have followed install docs to a "
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<jholmes> "T" and still the properties file can't be written to /usr/share/tomcat6/.OpenMRS
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<suho> hi have you started with the sudo command ?
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17:17:56
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<suho> else its better to download .. extract in the home directory
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17:18:14
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<suho> go to the /tomcat6/bin/
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<suho> and run ./catalina.sh run
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<jholmes> Yeah tomcat is being ran as a service
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17:19:36
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<jholmes> I do have a non-service installation of tomcat6 I can fire up and attempt
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<suho> yes that's better
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17:20:42
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<jholmes> when I create the hidden directory .OpenMRS do I still need to chown it to tomcat6:root?
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17:21:04
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<suho> otherwise always you need to start and run in the sudo mode
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17:21:48
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<suho> hey tomcat dont create a /.OpenMRS file in
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<suho> /usr/share/tomcat6/
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<suho> it creates that in your home directory
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<jholmes> Correct, I have created it
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17:23:09
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<jholmes> Ok, so with a non-instance install of tomcat it will still use the home directory? And OpenMRS will use the new CATALINA_HOME correct? OpenMRS doesn't default to /usr/share/tomcat6?
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17:23:55
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<suho> yes
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17:25:07
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<jholmes> Also, for a non-service instance of tomcat6 how do I disable the security? I don't see the flag in startup or catalina.sh?
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17:27:12
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<jholmes> Still getting the same error.. As soon as I click finish to start the process I get an error>>>>
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17:27:13
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<jholmes> Unable to find properties file: /home/joshua/.OpenMRS/openmrs-runtime.properties
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17:27:44
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<jholmes> I am getting the error when running tomcat6 as a service as well
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17:28:38
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<suho> delete the .OpenMRS Directory and
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17:29:19
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<suho> try with deleting the openmrs database too
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<suho> use the advance option when starting
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<suho> to set up OpenMRS
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<jholmes> Ok
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<jholmes> Well, even with a non-service instance of tomcat6, I've got nothing :-( Still getting issues with properties file and inability to find them
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17:40:08
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<jholmes> I've tried running tomcat as sudo too and using catalina.sh instead of startup.sh
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17:42:06
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<suho> deleted the openmrs database and the .OpenMRS Directory ??
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17:42:39
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<suho> then it should work as new
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17:57:46
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<jholmes> yeah I did that as well, fresh directory and fresh DB
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17:58:10
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<jholmes> It's installing DB data and sample data, we'll see if it finished the process I guess
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17:58:17
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<jholmes> regardless of the errors
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18:04:21
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<jholmes> There was an error while updating the database to the latest. file: liquibase-update-to-latest.xml. Error: liquibase-update-to-latest.xml does not exist Error while trying to update to the latest database version
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18:10:03
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Forum: Re: Missing patient identifier in PID segment <http://forum.openmrs.org/viewtopic.php?f=10&t=750#p2863>
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<suho> jholmes, hmm share the error log
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<jholmes> suho, well here is the last 100 or so lines
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18:36:32
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<jholmes> INFO: Release Database Lock Feb 16, 2011 1:05:30 PM liquibase.lock.LockHandler releaseLock INFO: Successfully released change log lock Feb 16, 2011 1:05:30 PM liquibase.database.template.JdbcTemplate comment INFO: Lock Database Feb 16, 2011 1:05:30 PM liquibase.lock.LockHandler acquireLock INFO: Successfully acquired change log lock Feb 16, 2011 1:05:30 PM liquibase.parser.xml.XMLChangeLogHandler startElement WARNING: liquibase-demo
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18:37:44
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<jholmes> haha or I guess not, can't copy/paste that much in here, but I'll paste the relavant error
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18:37:47
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<jholmes> Error while trying to update to the latest database version org.openmrs.util.DatabaseUpdateException: There was an error while updating the database to the latest. file: liquibase-update-to-latest.xml. Error: liquibase-update-to-latest.xml does not exist
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18:39:07
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<jholmes> Seeing quite a few of these WARNINGs as well.. WARNING: liquibase-core-data.xml is using schema version 1.8 rather than version 1.
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18:39:17
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<jholmes> 1.9*
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18:40:17
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Forum: Re: Missing patient identifier in PID segment <http://forum.openmrs.org/viewtopic.php?f=10&t=750#p2864>
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18:40:29
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<bwolfe> jholmes: you can ignore the 1.8 vs 1.9 thing
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18:40:50
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<bwolfe> jholmes: use http://pastebin.com for pasting error messages. just copy/paste the link to that in here
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18:41:15
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<bwolfe> jholmes: can't find liquibase-update-to-latest ?? now thats more serious.
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18:41:22
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<bwolfe> are you building from source or installing a version?
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18:43:37
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<slackell> Hi, does anyone implement the point of care data entry or is mainly retrospective?
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18:44:21
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<slackell> it looks like to implement the point of care, a lot of modifications to openMRS would need to be done.
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18:44:27
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<bwolfe> some guys at pih are doing that now in most of their sites
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18:44:39
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<bwolfe> there are primarycare modules
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18:44:44
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<bwolfe> touchscreen modules
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18:44:53
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<bwolfe> etc, for POC
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18:46:35
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<slackell> oh so I can use those modules to help implement POC. Will look up PIH
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18:51:35
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<jholmes> http://pastebin.com/9zt0Czey
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18:52:10
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<bwolfe> jholmes: which openmrs version are you using?
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18:52:37
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<jholmes> 1.7.1
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18:53:05
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<jholmes> Tried tomcat6 as service and detached instance, followed every single instruction in the docs and this is on Ubuntu 10.10
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18:53:23
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<jholmes> Deployed WAR file, not from soruce
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18:53:35
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<bwolfe> was it always that liquibase-update-to-latest.xml not found error?
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18:54:16
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<jholmes> Well, I'm getting other errors but this is the only one showing up in red stopping installation for finishing
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18:55:31
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<bwolfe> very strange
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18:55:41
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<suho> are you sure the downloaded war is not corrupted
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18:56:19
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<suho> try another download / version
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18:56:20
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<bwolfe> agreed. jholmes the md5 for it is dc4476f81134754dbc6ed5b56477853b
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18:56:20
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<jholmes> Anything is very possible lol... Should I be downloading and compiling from source?
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<jholmes> Will re-download and verify against md5
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18:56:53
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<bwolfe> run "md5sum openmrs.war" on your download and compare
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19:03:52
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<jholmes> looks like checksum wsa correct
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19:05:39
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<bwolfe> hmm
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19:06:54
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<jholmes> As a side note, I think it would be great for those evaluating OpenMRS, to have a Ubuntu VirtualBox appliance that could be downloaded and started up for those wanting to play with a copy local and install stuff etc
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19:07:46
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<jholmes> My company is really looking into OpenMRS and thrilled with a lot of the concepts and architecture, but having trouble really getting a basic copy up and running which is really a road block
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19:08:21
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<bwolfe> dkayiwa: the standalone thing created my runtime properties in my home dir, not in the dir of the jar's directory. is that intentional?
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19:08:32
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<dkayiwa> yes
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19:08:43
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<dkayiwa> openmrs is the one which does so
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<bwolfe> jholmes: dkayiwa is working on a standalone executable jar file. one command in linux/windows/osx and you've got everything going (with demo data already)
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<dkayiwa> so after it has done so, you can then cut and paste it in the standalone folder
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<bwolfe> I see
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19:09:33
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<downeym> hi *
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19:11:11
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<dkayiwa> looks like we should upload a standalone download for him and others
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19:11:18
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<jholmes> That would be very nice
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19:11:21
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<OpenMRSBot> Recent updates in the world of openmrs: New Changeset: OpenMRS 1.8.x #18269: [Ben Wolfe] Added search loading image for slow autocomplete searches - TRUNK-2016 <http://feedproxy.google.com/~r/OMRStrunk/~3/YP-4zV9aERc/> || New Changeset: OpenMRS trunk #18268: [Ben Wolfe] Added search loading image for slow autocomplete searches - TRUNK-2016 <http://feedproxy.google.com/~r/OMRStrunk/~3/fWfNFcHcJow/>
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<bwolfe> bad new jholmes: I downloaded the 1.7.1 war and it ran through everything just fine
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<bwolfe> no liquibase errors. :-/
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<jholmes> lol
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<jholmes> haha awesomer
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<jholmes> Well, what version of tomcat r u running it on?
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19:25:56
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<bwolfe> tomcat6
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<bwolfe> lost jholmes... :-/
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<downeym> maybe he was borrowing internet from dkayiwa
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<downeym> hey robbyoconnor
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19:41:30
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<bwolfe> dkayiwa: http://dl.dropbox.com/u/15259806/standalone-1.8.0-beta2.zip
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19:41:37
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<OpenMRSBot> <http://ln-s.net/8X3Q> (at dl.dropbox.com)
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19:42:04
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<dkayiwa> let me look at it
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19:43:44
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<bwolfe> dkayiwa: you don't have to dl it...its the full 180MB
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19:43:52
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<dkayiwa> ohhhhhh
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19:45:39
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<dkayiwa> looks like we can reduce that to something like around 140 MB
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19:45:47
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<dkayiwa> that is for all OSes
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<bwolfe> dkayiwa: how to reduce that?
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19:51:09
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<downeym> Hello, jholmes! Welcome to the openmrs chat room.
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19:51:34
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<jholmes> bwolfe, r u running tomcat6 as a service or from a copy extracted to a directory?
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19:52:01
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<bwolfe> jholmes: extracted
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19:52:07
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<bwolfe> 6.0.26
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19:53:29
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<dkayiwa> bwolfe: You just do not distribute some folders which can be automatically reconstructed. eg database/bin, database/share, tomcat/openmrs-1.8.0-beta2
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19:58:05
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<bwolfe> dkayiwa: ah yes
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19:58:20
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<bwolfe> I took out the two database ones but left the tomcat/webapps/openmrs/ folder
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19:58:36
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<dkayiwa> oh i see
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19:58:57
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<dkayiwa> dont also forget to delete the tomcat/work & tomcat/logs
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19:59:07
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<dkayiwa> though they are not very big
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19:59:21
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<bwolfe> dkayiwa: ooo, apparnetly I left in the .svn files too
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19:59:33
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<bwolfe> would be nice to provide a commandline that does it all for you
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19:59:39
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<dkayiwa> :)
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19:59:49
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<dkayiwa> i completely agree
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20:00:29
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<bwolfe> dkayiwa: how hard is it to make that jar name changeable?
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20:01:00
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<dkayiwa> not hard at all. i hardcoded it in just one place in the code
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20:01:06
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<bwolfe> worst case is we name it just openmrs-standalone.jar and the zip name and/or root folder name get hte openmrs version
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20:04:43
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20:12:12
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<bwolfe> dkayiwa: more tips for the standalone
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20:12:22
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<bwolfe> 1) send output to a log file
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20:12:42
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<dkayiwa> that is already done
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20:13:01
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<bwolfe> 2) only use the print output to tell the user what is going on. eg. 'starting openmrs', 'go to localhost:8080/openmrs to view the app', 'error starting openmrs', etc
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20:13:15
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<bwolfe> 3) dont' show the gif with commandline. assume this is being used on a headless server
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20:13:15
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<dkayiwa> ok
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20:13:28
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<dkayiwa> oh yeah
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20:14:11
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<bwolfe> 3) its not working for me on another server. how much memory is it trying to allocate?
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20:14:34
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<bwolfe> the jar works on my local machine, but doesn't when used on another machine
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20:14:47
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<dkayiwa> -Xmx512m -Xms512m -XX:PermSize=256m -XX:MaxPermSize=256m -XX:NewSize=128m
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20:15:35
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<bwolfe> dkayiwa: 4) put in the instructions to put everything in a root folder, like 'openmrs-1.8.0-beta'. that way when extracted they're all together instead of in someone's download folder
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20:16:01
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<dkayiwa> i experienced that on one of the computers i tried and it only worked after i increased its virtual memory
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20:16:50
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<dkayiwa> ok
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20:19:01
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<bwolfe> dkayiwa: ok, copied to a new folder and unzipped and got the same error
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20:19:12
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<bwolfe> its a Access denied for user 'openmrs'@'localhost'
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20:19:20
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<bwolfe> the connection username/pw I gave were openmrs/test
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20:20:28
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<dkayiwa> can you try run it again but specify a different mysql port and see if it works
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20:20:29
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<dkayiwa> ?
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20:22:17
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<bwolfe> dkayiwa: just change the runtime properties?
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20:23:09
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<bwolfe> dkayiwa: interesting, yes, that works
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20:23:13
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<dkayiwa> yes that is one of the ways (by changing the port it the connection string of the properties file)
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20:23:35
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<dkayiwa> or just use the -mysqlport command line argument
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20:23:54
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<bwolfe> so somethign else is running on 3316 ?
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20:24:12
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<dkayiwa> i thin the previous mysql instance at 3316 was not stopped
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20:24:26
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<dkayiwa> yes
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20:25:02
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<bwolfe> oh, when I kill the commandline jar it doesn't kill tomcat/mysql that it started??
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20:25:31
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<dkayiwa> how do you kill it?
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20:25:43
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<dkayiwa> using the stop or exit commandline argument?
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20:25:53
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<bwolfe> control-c
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20:25:57
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<bwolfe> old-school. :-)
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20:26:02
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<dkayiwa> oh i see
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20:26:36
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<dkayiwa> looks like killing did not stop mysql :)
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20:28:01
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<bwolfe> dkayiwa: why is the port getting reset to 3016 after starting the jar ?
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20:28:08
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<bwolfe> (in the runtime properties file)
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20:28:35
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<dkayiwa> when did you last update your code?
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20:29:11
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<dkayiwa> There is a bug i fixed today about the same issue
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20:29:45
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<bwolfe> hmm, not today
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20:29:56
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* bwolfe updates
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20:30:53
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20:30:59
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<dkayiwa> ok
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20:31:26
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<jholmes> Even with a fresh new copy of the WAR, fresh new download of tomcat6 I'm still getting the following when installing... http://pastebin.com/agPg6cyE
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20:32:16
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<bwolfe> jholmes: thats ok. now go to the webapp
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<bwolfe> http://localhost:8080/openmrs-1.7.1
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20:32:52
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<jholmes> As soon as the installation finishes .. Hopefully without more errors I'll navigate to the webapp and see if we have a winner
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20:34:38
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<bwolfe> dkayiwa: my jar export ends with warnings about duplicate classes. is that normal?
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20:35:02
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<dkayiwa> yes i got it all the time
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20:35:45
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<dkayiwa> you could also use the Run As Maven Package
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20:36:40
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<jholmes> SUCCESS
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20:36:59
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<dkayiwa> :D
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20:37:37
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<jholmes> After using a fresh copy of Tomcat6 and a fresh copy of the WAR and deploying the WAR it made it through installation... *phheeww*
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20:39:13
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<bwolfe> jholmes: woohoo!
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20:39:16
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<bwolfe> jholmes: sorry about all that hassle
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20:39:31
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<bwolfe> must have been a tomcat corrupt dl maybe?
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20:40:44
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<bwolfe> dkayiwa: yeah, mysql definitely is not being killed off when I do a control-c. will test with the updated code
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20:41:17
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<dkayiwa> ok
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20:45:27
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* bwolfe is comfy at 1.5
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20:45:29
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<downeym> Hi gbastienand welcome to the openmrs IRC channel.
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20:45:32
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<downeym> Hi gbastien_and welcome to the openmrs IRC channel.
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20:47:41
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<bwolfe> dkayiwa: if I don't put commandline at the end I get:
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20:47:43
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<bwolfe> Exception in thread "main" java.lang.IllegalArgumentException: input == null!
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20:47:43
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<bwolfe> at javax.imageio.ImageIO.read(ImageIO.java:1362)
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20:47:43
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<bwolfe> at org.openmrs.standalone.MainFrame.initComponents(MainFrame.java:207)
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20:47:43
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<bwolfe> at org.openmrs.standalone.MainFrame.<init>(MainFrame.java:62)
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20:47:44
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<bwolfe> at org.openmrs.standalone.ApplicationController.init(ApplicationController.java:181)
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20:47:46
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<bwolfe> at org.openmrs.standalone.ApplicationController.<init>(ApplicationController.java:37)
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20:47:48
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<bwolfe> at org.openmrs.standalone.ApplicationController.main(ApplicationController.java:90)
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20:47:50
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<bwolfe> Exit:1
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20:48:28
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<dkayiwa> oh let me try it out
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20:49:30
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<robbyoconnor> hey downeym
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20:49:35
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<robbyoconnor> and goodbye at the same time LOL
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20:49:38
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<downeym> lol
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<bwolfe> downeym: can you tune your bottedness to greet someone, say, after 30 seconds ?
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20:52:20
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<downeym> yeah i can, i had to dust it off
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20:53:04
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<bwolfe> dkayiwa: and how are we going to tell people what the default admin password is? Can we just decide to always use, say, Admin123 ?
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20:53:11
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<bwolfe> or Welcome123 ?
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20:53:48
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<dkayiwa> i was using Welcome123
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20:54:06
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<dkayiwa> though Admin123 looks easier
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<downeym> Hi JFchewer and welcome to the #openmrs IRC channel.
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20:55:00
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<dkayiwa> bwolfe: as for the other exception, do you have src/main/resources/org/openmrs/standalone/openmrs_logo_white.gif in your checkout?
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<downeym> Hi JFchomper and welcome to the #openmrs IRC channel.
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<downeym> bwolfe: ok, randomization built in to reduce your annoyance :P
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20:59:29
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<bwolfe> dkayiwa: I have an empty resources folder
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20:59:33
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<bwolfe> downeym: gee thanks
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20:59:40
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<bwolfe> downeym: now I'll just be annoyed randomly
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20:59:41
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<bwolfe> :-p
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20:59:49
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<downeym> bwolfe: any different than normal?
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21:00:40
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<bwolfe> from you? nah
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21:00:48
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<downeym> consistency++
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21:01:34
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21:02:19
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<downeym> !karma consistency
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21:02:19
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<OpenMRSBot> downeym: Karma for "consistency" has been increased 1 time and decreased 0 times for a total karma of 1.
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21:07:24
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<downeym> Hi dkayiwa and welcome to the #openmrs IRC channel.
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21:07:47
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<dkayiwa> :O
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21:08:24
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<dkayiwa> bwolfe: i have now committed the resources folder contents
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21:09:36
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<bwolfe> awesome
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21:17:46
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<downeym> hi dkayiwa - openmrs_logo_white.gif for the main app has recently been updated in rev:17879, you can see it in http://tickets.openmrs.org/browse/TRUNK-1620
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21:18:17
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<bwolfe> dkayiwa: ah ha! the jar works now!
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21:18:46
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<dkayiwa> sorry subclipse had messed up the commit ending into missing files
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21:18:51
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<dkayiwa> good to hear
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21:20:17
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<bwolfe> dkayiwa: so now you just need to add a shutdown hook that also shuts down mysql
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21:20:21
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<bwolfe> and then we're at alpha stage for it. :-)
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21:20:41
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<dkayiwa> sure :)
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<downeym> Hi OpenMRSBot and welcome to the #openmrs IRC channel.
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<downeym> Hi pascal` and welcome to the #openmrs IRC channel.
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