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<saimanohar> hi pascal`
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<saimanohar> i am trying to play with regadb as soon as i update try to update the script , the software is accessing the data from http://virolab.med.kuleuven.be/wts/services/GetChallenge
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<saimanohar> n this link is not working
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<saimanohar> so the data in the localdb is not updated
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<saimanohar> unless that is done i wont be able to figure out how regadb takes in data for viral load , cd4 graphs getting generated n all that
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<saimanohar> n cant design the ui for data entry in openmrs
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<pascal`> hi saimanohar
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<saimanohar> hey hi
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<saimanohar> pascal`:
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<saimanohar> pbrandt:
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<saimanohar> hi pascal
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<saimanohar> was just about to write a mail to you
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<pascal`> hi saimanohar
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<pascal`> saimanohar, I saw your question, you'll need to mail the Rega guys about that link not working
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<saimanohar> well nothin in rega seems to be working
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<pascal`> saimanohar, are you running an actual release?
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<saimanohar> i mean to see how the viral load and cd4 charts render
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<saimanohar> how do they take input so that we can design our adaptor
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<saimanohar> yes
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<pascal`> saimanohar, I'm not sure how they take input
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<saimanohar> they dont even have a user guide
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<saimanohar> coz see if we need to have the viral load , cd4 graphs we need to input the data
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<saimanohar> for which we would require a ui cause it cant be a background process
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<pascal`> saimanohar, that functionality is secondary to the drug resistance analysis
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<pascal`> saimanohar, also, it's partly already available in OpenMRS
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<saimanohar> even for drug resistance they have said it works but no demo server or steps to see how it works is given
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<saimanohar> ok lets focus on drug analysis only
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<saimanohar> in openmrs we can prescribe drugs using drug order rite
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<saimanohar> for regadb to give predictions on drug resistence we need to know what all information would it take some information
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<saimanohar> whats that information , how would we give that through openmrs , would it be a background process or the user needs to enter the details
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<pascal`> saimanohar, brb, just have to take care of somthing
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<saimanohar> ok
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07:10:31
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<saimanohar> i found out this on internet for drug resistence http://jose.med.kuleuven.be/sequencetool/sequencetool.wt?wtd=mpcxRuggb1r0bt8lK0EiQsnQysh5CCKc&js=yes&ajax=yes
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<OpenMRSBot> <http://ln-s.net/5ppD> (at jose.med.kuleuven.be)
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<saimanohar> we can follow the same procedure or make alterations depending on our need >MCHU - Calmodulin - Human, rabbit, bovine, rat, and chicken ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA DIDGDGQVNYEEFVQMMTAK*
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<saimanohar> sorry
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<saimanohar> http://virolab.cyfronet.pl/trac/vlvl/wiki/ExperimentDemo
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<OpenMRSBot> <http://ln-s.net/5ppO> (at virolab.cyfronet.pl)
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Tickets: Ticket #2270 (task created): Clean up module administration page <http://dev.openmrs.org/ticket/2270>
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<pascal`> saimanohar, I'm pretty sure the FASTA file format will be used for sequences
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<saimanohar> yes
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<saimanohar> so u think we need to take the input fasta file from the clinician
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<saimanohar> did u go through the url i have mentioned
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<saimanohar> http://jose.med.kuleuven.be/sequencetool/sequencetool.wt?wtd=mpcxRuggb1r0bt8lK0EiQsnQysh5CCKc&js=yes&ajax=yes
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<OpenMRSBot> <http://ln-s.net/5ppD> (at jose.med.kuleuven.be)
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<saimanohar> its takes the fasta file n gives the drug predictions
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<saimanohar> we even need to specify which algorith should be used to make the drug predictions
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<pascal`> saimanohar, I haven't gone through the link
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<pascal`> saimanohar, I think the clinician or the data capturer will have the FASTA file, yes
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<pascal`> saimanohar, we can go into more of the details when the GSoC decisions have been made
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<saimanohar> ok
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07:55:12
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<saimanohar> i guess i am bugging you a lot
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<saimanohar> ok
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07:55:56
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<saimanohar> i think i should wait for the results n then investigate through all these thing sif at all i am selescted
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07:58:49
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<pascal`> saimanohar, add everything you've done to your proposal, it can't hurt (=
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<pascal`> saimanohar, and focus on resistance prediction
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<upul`> hey pascal`
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<pascal`> hey upul`
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<upul`> danielf`, welcome to ` club
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<danielf`> hehe` thanks` upul`
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<danielf`> it was a tough choice between _ and `
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08:01:58
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* pascal` notes that basic` was the original
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<upul`> what happend to danielf`
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<upul`> danielf
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<pascal`> was regestered i think upul`
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<upul`> pascal`, you just woke ba sic`
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<danielf`> yep, someone'd beaten me to it, but i was too lazy to pick a new nick
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<pascal`> upul`, basic` never sleeps
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<Echidna> really not looking forward to maven =/
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<pascal`> why not Echidna?
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<Echidna> its so complex =/
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<Echidna> and adds even more projects to my crowded workspace
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<pascal`> ah
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<upul`> Echidna, do you see smoke in the sky?
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<pascal`> upul`, the ash cloud isn't visible
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<upul`> there won't be any issues if they fix fog lights in the planes
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<upul`> ha ha
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Tickets: Ticket #2271 (defect created): Setting a secret question from the user.form page doesn't work <http://dev.openmrs.org/ticket/2271>
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<Echidna> it's snowing..
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<pascal`> hey chopin_
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<pascal`> hey jmiranda
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<chopin_> hey pascal`
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<jmiranda> hey pascal`
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Changesets: Changeset [13032]: growthchart: Creating initial directory <http://dev.openmrs.org/changeset/13032>
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<pascal`> hey downeym
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<downeym> hey pascal`
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<pascal`> hey nribeka
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<djazayeri> http://n2.nabble.com/regarding-ORDER-STATUS-td4823676.html#a4823676
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<OpenMRSBot> <http://ln-s.net/5pxC> (at n2.nabble.com)
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* downeym reminds you about the design review call happening now: http://n2.nabble.com/regarding-ORDER-STATUS-td4823676.html#a4914935
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<OpenMRSBot> <http://ln-s.net/5pxE> (at n2.nabble.com)
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<pascal`> hey bwolfe, djazayeri
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Changesets: Changeset [13033]: growthchart: Initial commit of module files <http://dev.openmrs.org/changeset/13033>
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<nribeka> hi pascal`
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<nribeka> design call
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<nribeka> ;)
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<pascal`> yup
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<bwolfe> hi pascal`
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Changesets: Changeset [13034]: Fixing feature -- questions have been modified to filter for exited from ⦠<http://dev.openmrs.org/changeset/13034>
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Changesets: Changeset [13035]: Modified By Krishnaja <http://dev.openmrs.org/changeset/13035>
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Tickets: Ticket #2271 (defect closed): Setting a secret question from the user.form page doesn't work <http://dev.openmrs.org/ticket/2271#comment:2>
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<Ladyfa> hello everyone
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<chopin> o/ all
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Tickets: Ticket #2272 (task created): Rearrange add, upgrade, and download-from-repository features on module administration page <http://dev.openmrs.org/ticket/2272>
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<Ladyfa> pascal`: hello
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<pascal`> hi Ladyfa
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<Ladyfa> I'm so glad to meet you at last
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<Ladyfa> i've been trying since 3 days to discuss with you
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<pascal`> Glad to meet you too Ladyfa
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<Ladyfa> i wanted to discuss onhow to improve my application
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15:51:50
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<pascal`> Ladyfa, the last chat I remember from you was http://dev.openmrs.org/irclogs/2010/04/19#T16:35:39
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<OpenMRSBot> <http://ln-s.net/5q2w> (at dev.openmrs.org)
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<pascal`> Ladyfa, did I make a comment on your proposal?
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<Ladyfa> yes
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15:53:13
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<Ladyfa> you asked me to draw a plan of my proposed solution
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15:53:31
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<Ladyfa> and to to give time frames
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15:53:56
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<Ladyfa> i'm about to submit the answer
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15:54:05
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<pascal`> Ladyfa, ok, I'll have a look
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<Ladyfa> thanks
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15:55:24
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<downeym> slt Ladyfa
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<Ladyfa> slt downeym
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<Ladyfa> comment-tu vas aujourd'hui?
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15:57:03
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<downeym> eh ca va et toi?
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<Ladyfa> je manque de sommeil mais ça peut aller
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<chopin_> blah blah blah wee wee blah
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<ruwan> I'm setting up an ubuntu openmrs dev. env.
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<downeym> cool :)
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16:10:15
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<ruwan> and I'm facing this problem... http://stackoverflow.com/questions/1356616/configuring-tomcat-6-with-eclipse-in-ubuntu
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<OpenMRSBot> <http://ln-s.net/5q48> (at stackoverflow.com)
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16:11:28
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<ruwan> should I abandon the apt-get installed tomcat and download and use the tar.gz?
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16:11:29
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<downeym> most of us are in a meeting right now, but have you checked this? http://openmrs.org/wiki/Troubleshooting_Tomcat
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16:11:44
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* downeym recommends the tar.gz always for lots of reasons :)
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16:12:07
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<downeym> but someone may disagree with me
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16:12:15
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<ruwan> cool! tar.gz it is!
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16:12:39
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<ruwan> since i'm having issues
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16:13:05
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<downeym> at least try it and see :)
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16:13:40
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<umashanthi> ruwan: yes. I have setup OpenMRS in Ubuntu. The tomcat comes with Ubuntu always gives trouble for me. Better to follow the way mentioned in the documentation
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16:14:16
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<ruwan> thanks umashanthi
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16:15:31
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<umashanthi> ruwan: I followed this article: http://openmrs.org/wiki/Step-by-Step_Installation_Guide_for_Ubuntu_8.10_for_Developers. This works for Ubuntu 9.04 and 9.10 as well
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16:15:35
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<OpenMRSBot> <http://ln-s.net/5q5U> (at openmrs.org)
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16:16:54
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<ruwan> umashanthi, but you skipped sudo aptitude install tomcat6 tomcat6..?
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<umashanthi> ruwan: No I did it. It has overwritten the default one I had
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<umashanthi> ruwan: you managed to solve the issue?
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<ruwan> i'm gonna use the tar.gz
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<umashanthi> ruwan: ok. try it and see
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<noirin> Any of the GSoC admins around?
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<chopin_> noirin: openmrs only has one gsoc admin -- downeym
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<chopin_> he's around somewheres ... just left a meeting
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<noirin> chopin_: Thanks
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<noirin> No rush, just trying to be well-prepped for the de-dupe meeting :-)
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<chopin> noirin: cool
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<astelmashenko> hi all
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<nribeka> hi astelmashenko
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<pascal`> hi astelmashenko
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<nribeka> irc is pretty quiet lately
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17:10:52
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* downeym looks at robbyoconnor
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<downeym> ;)
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17:11:38
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<robbyoconnor> doing hw
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17:11:40
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<robbyoconnor> later
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17:12:12
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<downeym> homework ... i should do some of that :)
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17:14:58
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<raffael> homework should have never been invented ;)
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17:15:33
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<downeym> homework--
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17:15:39
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<downeym> !karma homework
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<OpenMRSBot> downeym: Karma for "homework" has been increased 0 times and decreased 1 time for a total karma of -1.
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<raffael> homework--
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17:20:11
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<raffael> i couldn't make for todays design call, are there anywhere notes from that one?
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<downeym> bwolfe__
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<downeym> chopin
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<downeym> :P
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<raffael> i see :)
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17:21:20
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* downeym didn't make it either
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17:21:28
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Tickets: Ticket #2271 (defect reopened): Setting a secret question from the user.form page doesn't work <http://dev.openmrs.org/ticket/2271#comment:3>
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17:23:50
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<robbyoconnor> Im studying for an exam
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17:24:25
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<downeym> ugh
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17:24:38
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<raffael> good luck then
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17:25:36
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* downeym wonders when the "am i eligible for gsoc this year" questions will end on the mailing list
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17:26:15
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<chopin> raffael: http://openmrs.org/wiki/Design_Review_Schedule
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17:26:51
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<raffael> downeym: how is it that i haven't seen such a question not even once?
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17:26:59
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<raffael> thanks chopin!
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17:27:03
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<chopin> raffael: in a word, no. generally speaking, it's best to just get a synopsis from resulting tickets or suggest we cover the topic again
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17:27:10
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<downeym> raffael: was talking about the google gsoc mailing list
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<raffael> downeym: i didn't now that one exists ;)
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<robbyoconnor> downeym: no
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17:34:11
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<robbyoconnor> because students are idiots
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17:34:19
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<robbyoconnor> anybody who asks doesnt belong in the program
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17:34:43
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<downeym> !downeymsays
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17:34:43
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<OpenMRSBot> downeym: "downeymsays" --- Get the most out of your questions and posts. Ask questions the smart way : http://www.catb.org/~esr/faqs/smart-questions.html
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17:34:50
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<chopin> or it reflects on how well the rules were communicated
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17:35:11
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<downeym> i think it basically reflects on inability to rtfm
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<downeym> especially after the deadline :)
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17:36:30
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<robbyoconnor> nobody asks smart questions
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17:36:34
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<robbyoconnor> I've learned this
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17:36:55
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<downeym> some do, they're just harder to notice :)
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<robbyoconnor> The majority of students who asked these questions will fail
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<downeym> nribeka++
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<nribeka> downeym++
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<nribeka> so stop bitching and start coding peeps ...
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* OpenMRS|downeym invites all gsoc mentors to #gsoc-dedup ... use nick OpenMRS|yournick ...
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Tickets: Ticket #2149 (defect closed): person search won't search past spaces in name strings <http://dev.openmrs.org/ticket/2149#comment:8> || OpenMRS Changesets: Changeset [13036]: HtmlFormFlowsheet Initial import. <http://dev.openmrs.org/changeset/13036>
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<OpenMRS|downeym> wyclif nribeka djazayeri jmiranda hope you can /join
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<jmiranda> OpenMRS|downeym, sorry can't make it
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<djazayeri> OpenMRS|downeym neither can i
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<OpenMRS|downeym> ok ;)
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<wyclif> hey
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<OpenMRS|nribeka> djazayeri, do you have a minute? i have a quick question
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<djazayeri> OpenMRS|nribeka, yes, but i'm on a call now
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<djazayeri> i can answer with 10% of my brain
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18:45:53
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<OpenMRS|nribeka> ok, fair enough. 10% is more than enough I think
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18:46:14
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<OpenMRS|nribeka> so, I have an encounter, the encounter have a location of the encounter
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<OpenMRS|nribeka> if I update the encounter location, shouldn't the change also propagated to the obs under that encounter?
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18:47:14
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<djazayeri> it should
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18:47:22
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<djazayeri> does it not?
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18:47:28
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<OpenMRS|nribeka> well, it's not right now
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<OpenMRS|nribeka> Version: 1.7.0 dev Build 12754
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<OpenMRS|chopin> voiding a patient also does not replicate to any connected data
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18:47:50
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<djazayeri> I thought there was special code in the Encounter save handler that propagated location and encounter_datetime down to obs.
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18:48:01
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<djazayeri> hmm...it did at some point
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18:48:27
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* OpenMRS|chopin spent a half hour writing void update queries last night to void connected data
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18:49:04
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<OpenMRS|nribeka> ok, some changes must have override that behavior then djazayeri
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<djazayeri> EncounterService.saveEncounter has this:
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18:49:15
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<djazayeri> @should only cascade the obsdatetimes to obs with different initial obsdatetimes
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18:49:52
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<OpenMRS|nribeka> so, not cascading the location is an expected behavior?
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18:50:24
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<djazayeri> I thought that location behaved encounter_datetime
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18:50:55
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<djazayeri> look at the @shoulds on EncounterService.saveEncounter and run the unit tests
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18:51:07
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<djazayeri> they must be passing or else CI would have complained
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18:51:57
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<OpenMRS|nribeka> hmm i use the webapp to update an encounter location and the location for the encounter is updated but not the obs
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18:52:01
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<OpenMRS|nribeka> running the test
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18:53:06
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<OpenMRS|nribeka> no failure on the test
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18:53:16
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Changesets: Changeset [13038]: in patientmatching module, change method of getting value frequency from ⦠<http://dev.openmrs.org/changeset/13038> || OpenMRS Changesets: Changeset [13037]: htmlformflowsheet module: Removing to fix folder name <http://dev.openmrs.org/changeset/13037>
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<OpenMRS|pascal`> it's chaos in there
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Changesets: Changeset [13039]: htmlformflowsheet Initial import. <http://dev.openmrs.org/changeset/13039>
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Changesets: Changeset [13040]: htmlformflowsheet Initial import. <http://dev.openmrs.org/changeset/13040>
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<downeym> !nribeka
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<OpenMRSBot> downeym: "nribeka" --- Nyoman
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<Hazamonzo> jmiranda: Ping
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<jmiranda> hey Hazamonzo
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21:45:28
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<jmiranda> i'll send the link for the ER diagram
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21:45:42
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<jmiranda> and the demo data in a sec
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21:45:53
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<Hazamonzo> Cheers. Im going to put some time into this. What spare time i can
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21:46:08
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<Hazamonzo> I promised a while back and even though we got started it never really went much further
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21:46:35
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<Hazamonzo> I have some cool BI tech ive been working on that could help with deploying and keeping the bi server up to date
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21:46:39
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<jmiranda> Hazamonzo, http://openmrs.org/wiki/Downloads
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21:46:47
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<jmiranda> scroll down a bit to get to the Data section
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21:46:47
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<Hazamonzo> I'll donate the scripts and a bit of writing on it
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21:47:10
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<jmiranda> Hazamonzo, sweet
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21:47:13
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<jmiranda> thanks so much
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21:47:13
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<Hazamonzo> Perfect
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21:47:25
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<jmiranda> and let's keep talking
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21:47:32
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<Hazamonzo> So before i go reinventing the wheel.. is there anyone i should talk to about this?
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21:47:41
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<Hazamonzo> Or is it just yourself involved in this part?
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21:47:49
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<jmiranda> i am not aware of anyone else
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21:48:18
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<Hazamonzo> Okay
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21:48:23
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<jmiranda> i know that docpaul (who is sometimes here) was working with pentaho directly to put something together
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21:48:26
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<jmiranda> but that was over a year ago
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21:48:31
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<Hazamonzo> Right
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21:48:35
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<Hazamonzo> jmiranda: You have a demo server somewhere?
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21:48:36
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<jmiranda> and i was not involved
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21:48:47
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<jmiranda> demo.openmrs.org
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21:48:53
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<Hazamonzo> a linux box we can install tomcat and a db server to
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21:48:54
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<Hazamonzo> okay
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21:48:59
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<jmiranda> oh
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21:49:05
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<jmiranda> i have my own
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21:49:15
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<jmiranda> and already have tomcat/mysql
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21:49:21
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<Hazamonzo> okay!
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21:49:26
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<jmiranda> will look into giving you access to that
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21:49:36
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<Hazamonzo> Out of interest.. how do you deploy the BI srerver these days?
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21:49:40
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<Hazamonzo> *server
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21:49:41
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<jmiranda> we should put together a plan over email
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21:49:48
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<Hazamonzo> Okay lets do that!
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21:49:57
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<Hazamonzo> harrislward@googlemail.com
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21:50:11
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<jmiranda> we just release a reporting module that does most of our business intelligence
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21:50:14
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<Hazamonzo> In the meantime. im going to read over what you have at the moment
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21:50:19
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<Hazamonzo> and install what you have at the moment
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21:50:25
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<Hazamonzo> get an idea of where you are
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21:50:40
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<jmiranda> and some groups are using birt through an openmrs plugin
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21:50:54
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<Hazamonzo> interesting...
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21:51:05
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<jmiranda> i wouldn't put too much time into the existing etl scripts
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21:51:15
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<jmiranda> but take a look at the transactional data model
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21:51:33
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<jmiranda> and we can discuss (offline) what query/report we should target
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21:51:40
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<jmiranda> the star schema necessary
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21:51:44
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<jmiranda> steps to get there
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21:51:55
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<Hazamonzo> Okay! sounds like a plan
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21:51:57
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<jmiranda> and tools that would be involved in the process
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21:52:00
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<Hazamonzo> what about the biserver?
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21:52:05
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<Hazamonzo> still looking to deploy that right?
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21:52:13
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<jmiranda> i'll set that up on my demo server
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21:52:21
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<jmiranda> i assume pentaho
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21:52:24
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<jmiranda> version?
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21:52:26
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<Hazamonzo> jmiranda: How do you deploy at the moment?
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21:52:42
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<jmiranda> oh
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21:52:49
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<Hazamonzo> download the latest version and unzip?
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21:52:52
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<Hazamonzo> or?
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21:53:23
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<jmiranda> how do we deploy what?
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21:53:30
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<jmiranda> pentaho?
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21:53:52
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<jmiranda> if that's what you were asking ... we aren't actually using pentaho at all yet
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<Hazamonzo> ahh i see
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21:55:18
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<jmiranda> http://openmrs.org/images/8/89/Openmrs_data_model_1.6.png
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21:55:21
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<OpenMRSBot> <http://ln-s.net/5qu9> (at openmrs.org)
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21:55:28
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<Hazamonzo> i thought you had a version of Pentaho that you had themed ect?
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21:55:55
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<jmiranda> Hazamonzo, yeah we did that as a project for google summer of code
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21:56:22
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<jmiranda> the scripts work, but we didn't really know much about how to design star schemas when we did that
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21:56:29
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<jmiranda> so i'm not sure how good it is
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21:56:36
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<Hazamonzo> Okay well as far as the server is concerned i have that sorted!
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21:56:37
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<jmiranda> but we could certainly start there
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21:56:44
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<Hazamonzo> I can deploy a brand new server with ease
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21:56:46
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<jmiranda> it runs on an old version of pentaho
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21:56:51
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<jmiranda> ok sweet
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21:57:55
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<Hazamonzo> i develop the server locally here. then run a script to deploy it on a remote linux machine
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21:58:04
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<Hazamonzo> really easy to mainatin and such
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21:58:28
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<jmiranda> Hazamonzo, your old user account still exists on my demo server
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21:58:34
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<jmiranda> i'll send you the details over email
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21:58:58
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<jmiranda> Hazamonzo, awesome
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<Hazamonzo> jmiranda: Cheers
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Tickets: Ticket #1652 (task closed): Database schema should indicate form type <http://dev.openmrs.org/ticket/1652#comment:6> || OpenMRS Tickets: Ticket #2273 (task created): Core should allow formentry modules to store view and resource metadata for a form <http://dev.openmrs.org/ticket/2273>
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