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<KASPEC> AHA
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<KASPEC> cmd 125.2
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<bwolfe> dfgasdgfasdfasdfasdfasdf
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<bwolfe> and thats all I have to say about that
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<OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Modules: Form Entry 3.3.3 uploaded to OpenMRS Module Repository <https://dev.openmrs.org/modules/view.jsp?module=formentry&version=&3.3.3>
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<nribeka> bmckown: what is MDR TB module?
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<nribeka> or bwolfe?
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<bwolfe> Multi drug resistant tuberclulosis
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<bwolfe> its a severe kind of TB that needs to be watched very closely
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<bwolfe> it involves many drugs
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<bwolfe> and involves making sure that people don't spread multi-drug resistant tb
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<nribeka> ah ic ic
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<nribeka> interesting
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<r0bby> /js/gg
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<r0bby> er
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<jacobb> bwolfe: I finally updated that web service ticket w/ a new patch as requested
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<nribeka> can i get a voice level too bwolfe haha :D
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<bwolfe> jacobb: thanks
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<bwolfe> nribeka: yeah, but docpaul needs to do it, I don't have the rights
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<nribeka> ah ic ic
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18:13:52
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<nribeka> haven't seen docpaul for ages in the irc
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<nribeka> is he still in vietnam?
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<bwolfe> hes back
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<nribeka> i'm in class about american health care issues :D
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<Keelhaul> nice, he can run for president now =P
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<nribeka> 10mins break
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<nribeka> Keelhaul, who? bwolfe?
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<Keelhaul> docpaul
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<nribeka> lol
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<nribeka> docpaul definitely can :D
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<Keelhaul> (mcain joke)
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<Keelhaul> +c
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<nribeka> tina fey as gov palin @ SNL
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<Keelhaul> i dont have american tv =/
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<Keelhaul> only cnn international
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<nribeka> ah ic ic
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<Keelhaul> writing in english is more challenging than i thought =/
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<docpaul> hi. :)
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<nribeka> hi docpaul
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<nribeka> how was vietnam?
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<nribeka> :D
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<nribeka> !help
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<OpenMRSBot> nribeka: (help [<plugin>] [<command>]) -- This command gives a useful description of what <command> does. <plugin> is only necessary if the command is in more than one plugin.
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22:37:43
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<docpaul> it was good!
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<docpaul> missed my family though
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<docpaul> now at least I am home with wife and son
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<nribeka> and another son/daughter that will come :D
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<docpaul> right!
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<docpaul> was your trip back good?
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<nribeka> yeps :D
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<docpaul> good... we appreciated you coming out to visit
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<docpaul> always nice to meet community folks. :)
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<nribeka> back home safely and now back enjoying the cold fall at pittsburgh :D
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<nribeka> still working with james and shaun but been missing for the weekend :)
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<docpaul> making some progress on the code?
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<nribeka> yeah, we manage to cut down the total time taken to around 40mins for 2.6M record pairs :D
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<docpaul> that's the power of a denormalized shadowed approach
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<nribeka> originally took 2 hours for 2.5k pairs
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<docpaul> that is an amazing difference
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<nribeka> yeps and i think the lazy loading also contribute a lot :D
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<nribeka> i have a question docpaul :D
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<docpaul> yes
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<nribeka> do you ever heard about the genomic personal record system?
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22:49:39
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<docpaul> no
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22:49:43
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<docpaul> what is it specifically?
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22:51:13
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<nribeka> http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000167
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22:51:14
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<OpenMRSBot> <http://ln-s.net/2Ini> (at www.plosgenetics.org)
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<nribeka> another class assignment that i want to ask to you actually :D
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<docpaul> eek, some light reading
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22:51:56
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<docpaul> :)
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22:52:38
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<docpaul> ah, ok... so SNP approaches like 23andme
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22:53:12
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<docpaul> the idea is that perhaps a snp collection can uniquely identify an individual?
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<nribeka> 23andme?
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22:54:58
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<docpaul> https://www.23andme.com/
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22:56:49
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<nribeka> yes i think that is the idea
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22:57:04
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<nribeka> small fraction can identify the a single person
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22:57:43
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<docpaul> i've met and spoken with the 23andme founders quite a bit
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22:58:16
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<nribeka> wow ...
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<nribeka> you're so cool docpaul
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22:58:49
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<docpaul> pahaha... you must have not really met me then
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22:58:51
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<docpaul> i'm far from cool
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22:59:40
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<docpaul> so how does this relate to personal record systems?
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22:59:47
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<docpaul> perhaps use this as a unique identifier?
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23:00:00
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<docpaul> like a chemical fingerprint?
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23:01:01
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<nribeka> it is said that the above paper have caused NIH to change their data share policy
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23:01:20
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<nribeka> that is why i would like to know more about it
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23:01:25
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<nribeka> do you have any recommendation for references about this topic?
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23:01:27
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<docpaul> ie, don't share snps b/c they're personally identifiable
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23:01:28
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<nribeka> about SNP
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23:01:44
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<nribeka> about 23andme
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23:01:55
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<nribeka> i'm not so sure
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23:02:01
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<nribeka> but from what i heard
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23:02:15
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<docpaul> http://en.wikipedia.org/wiki/Single_Nucleotide_Polymorphism
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23:02:17
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<OpenMRSBot> <http://ln-s.net/2Inp> (at en.wikipedia.org)
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23:02:46
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<nribeka> NIH have genome data that can be used by researcher (right?)
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23:03:04
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<docpaul> 23andme generates over 1k snp data reads from a teaspoon of your personal sputum for $400
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23:04:09
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<docpaul> 23andme is a good place to start, as it attempts to explain the process to the everyday person
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23:04:18
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<docpaul> b/c they want the consumer to buy the service. ;)
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23:04:50
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<nribeka> how do you know them docpaul?
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23:04:59
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<docpaul> met them at a google meeting
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23:05:15
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<nribeka> it's been a while since the last time i read biology books :D
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23:05:20
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<docpaul> https://www.23andme.com/more/genotyping/
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23:05:29
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<docpaul> i was wrong, they process 600k snps
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23:08:12
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<nribeka> looks pretty complicated :D
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23:08:23
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<docpaul> really simpler than it looks
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23:09:30
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<nribeka> out of 10M only 550k
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23:12:46
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<nribeka> they have a geneping
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23:12:47
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<nribeka> http://www.biomedcentral.com/1471-2164/7/93
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23:16:25
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<nribeka> i will ask for more medical terminology to you or shaun docpaul :D
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23:22:36
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<nribeka> the presentation in 23andme is interesting :)
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23:32:52
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<nribeka> docpaul thank you for the 23andme :D
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<nribeka> docpaul, i'm off to bed. tty next time docpaul :)
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