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| 04:48:04 | <KASPEC> AHA |
| 04:48:29 | <KASPEC> cmd 125.2 |
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| 07:38:15 | <bwolfe> dfgasdgfasdfasdfasdfasdf |
| 07:38:35 | <bwolfe> and thats all I have to say about that |
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| 08:53:30 | <OpenMRSBot> Recent updates in the world of openmrs: OpenMRS Modules: Form Entry 3.3.3 uploaded to OpenMRS Module Repository <https://dev.openmrs.org/modules/view.jsp?module=formentry&version=&3.3.3> |
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| 16:27:47 | <nribeka> bmckown: what is MDR TB module? |
| 16:28:24 | <nribeka> or bwolfe? |
| 16:28:46 | <bwolfe> Multi drug resistant tuberclulosis |
| 16:29:00 | <bwolfe> its a severe kind of TB that needs to be watched very closely |
| 16:29:06 | <bwolfe> it involves many drugs |
| 16:29:24 | <bwolfe> and involves making sure that people don't spread multi-drug resistant tb |
| 16:30:18 | <nribeka> ah ic ic |
| 16:30:21 | <nribeka> interesting |
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| 16:49:18 | <r0bby> /js/gg |
| 16:49:18 | <r0bby> er |
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| 18:05:21 | <jacobb> bwolfe: I finally updated that web service ticket w/ a new patch as requested |
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| 18:09:18 | <nribeka> can i get a voice level too bwolfe haha :D |
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| 18:13:15 | <bwolfe> jacobb: thanks |
| 18:13:28 | <bwolfe> nribeka: yeah, but docpaul needs to do it, I don't have the rights |
| 18:13:41 | <nribeka> ah ic ic |
| 18:13:52 | <nribeka> haven't seen docpaul for ages in the irc |
| 18:14:00 | <nribeka> is he still in vietnam? |
| 18:14:27 | <bwolfe> hes back |
| 18:15:34 | <nribeka> i'm in class about american health care issues :D |
| 18:15:44 | <Keelhaul> nice, he can run for president now =P |
| 18:15:51 | <nribeka> 10mins break |
| 18:16:04 | <nribeka> Keelhaul, who? bwolfe? |
| 18:16:11 | <Keelhaul> docpaul |
| 18:16:11 | <nribeka> lol |
| 18:16:20 | <nribeka> docpaul definitely can :D |
| 18:16:24 | <Keelhaul> (mcain joke) |
| 18:16:26 | <Keelhaul> +c |
| 18:17:01 | <nribeka> tina fey as gov palin @ SNL |
| 18:17:39 | <Keelhaul> i dont have american tv =/ |
| 18:17:43 | <Keelhaul> only cnn international |
| 18:18:33 | <nribeka> ah ic ic |
| 18:24:25 | <Keelhaul> writing in english is more challenging than i thought =/ |
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| 22:34:49 | <docpaul> hi. :) |
| 22:34:57 | <nribeka> hi docpaul |
| 22:35:06 | <nribeka> how was vietnam? |
| 22:35:07 | <nribeka> :D |
| 22:37:12 | <nribeka> !help |
| 22:37:12 | <OpenMRSBot> nribeka: (help [<plugin>] [<command>]) -- This command gives a useful description of what <command> does. <plugin> is only necessary if the command is in more than one plugin. |
| 22:37:43 | <docpaul> it was good! |
| 22:37:55 | <docpaul> missed my family though |
| 22:38:10 | <docpaul> now at least I am home with wife and son |
| 22:38:44 | <nribeka> and another son/daughter that will come :D |
| 22:39:53 | <docpaul> right! |
| 22:40:04 | <docpaul> was your trip back good? |
| 22:40:18 | <nribeka> yeps :D |
| 22:40:29 | <docpaul> good... we appreciated you coming out to visit |
| 22:40:45 | <docpaul> always nice to meet community folks. :) |
| 22:41:08 | <nribeka> back home safely and now back enjoying the cold fall at pittsburgh :D |
| 22:42:09 | <nribeka> still working with james and shaun but been missing for the weekend :) |
| 22:42:42 | <docpaul> making some progress on the code? |
| 22:44:03 | <nribeka> yeah, we manage to cut down the total time taken to around 40mins for 2.6M record pairs :D |
| 22:45:28 | <docpaul> that's the power of a denormalized shadowed approach |
| 22:45:32 | <nribeka> originally took 2 hours for 2.5k pairs |
| 22:45:49 | <docpaul> that is an amazing difference |
| 22:46:15 | <nribeka> yeps and i think the lazy loading also contribute a lot :D |
| 22:47:36 | <nribeka> i have a question docpaul :D |
| 22:47:41 | <docpaul> yes |
| 22:48:22 | <nribeka> do you ever heard about the genomic personal record system? |
| 22:49:39 | <docpaul> no |
| 22:49:43 | <docpaul> what is it specifically? |
| 22:51:13 | <nribeka> http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000167 |
| 22:51:14 | <OpenMRSBot> <http://ln-s.net/2Ini> (at www.plosgenetics.org) |
| 22:51:43 | <nribeka> another class assignment that i want to ask to you actually :D |
| 22:51:55 | <docpaul> eek, some light reading |
| 22:51:56 | <docpaul> :) |
| 22:52:38 | <docpaul> ah, ok... so SNP approaches like 23andme |
| 22:53:12 | <docpaul> the idea is that perhaps a snp collection can uniquely identify an individual? |
| 22:53:54 | <nribeka> 23andme? |
| 22:54:58 | <docpaul> https://www.23andme.com/ |
| 22:56:49 | <nribeka> yes i think that is the idea |
| 22:57:04 | <nribeka> small fraction can identify the a single person |
| 22:57:43 | <docpaul> i've met and spoken with the 23andme founders quite a bit |
| 22:58:16 | <nribeka> wow ... |
| 22:58:27 | <nribeka> you're so cool docpaul |
| 22:58:49 | <docpaul> pahaha... you must have not really met me then |
| 22:58:51 | <docpaul> i'm far from cool |
| 22:59:40 | <docpaul> so how does this relate to personal record systems? |
| 22:59:47 | <docpaul> perhaps use this as a unique identifier? |
| 23:00:00 | <docpaul> like a chemical fingerprint? |
| 23:01:01 | <nribeka> it is said that the above paper have caused NIH to change their data share policy |
| 23:01:20 | <nribeka> that is why i would like to know more about it |
| 23:01:25 | <nribeka> do you have any recommendation for references about this topic? |
| 23:01:27 | <docpaul> ie, don't share snps b/c they're personally identifiable |
| 23:01:28 | <nribeka> about SNP |
| 23:01:44 | <nribeka> about 23andme |
| 23:01:55 | <nribeka> i'm not so sure |
| 23:02:01 | <nribeka> but from what i heard |
| 23:02:15 | <docpaul> http://en.wikipedia.org/wiki/Single_Nucleotide_Polymorphism |
| 23:02:17 | <OpenMRSBot> <http://ln-s.net/2Inp> (at en.wikipedia.org) |
| 23:02:46 | <nribeka> NIH have genome data that can be used by researcher (right?) |
| 23:03:04 | <docpaul> 23andme generates over 1k snp data reads from a teaspoon of your personal sputum for $400 |
| 23:04:09 | <docpaul> 23andme is a good place to start, as it attempts to explain the process to the everyday person |
| 23:04:18 | <docpaul> b/c they want the consumer to buy the service. ;) |
| 23:04:50 | <nribeka> how do you know them docpaul? |
| 23:04:59 | <docpaul> met them at a google meeting |
| 23:05:15 | <nribeka> it's been a while since the last time i read biology books :D |
| 23:05:20 | <docpaul> https://www.23andme.com/more/genotyping/ |
| 23:05:29 | <docpaul> i was wrong, they process 600k snps |
| 23:08:12 | <nribeka> looks pretty complicated :D |
| 23:08:23 | <docpaul> really simpler than it looks |
| 23:09:30 | <nribeka> out of 10M only 550k |
| 23:12:46 | <nribeka> they have a geneping |
| 23:12:47 | <nribeka> http://www.biomedcentral.com/1471-2164/7/93 |
| 23:16:25 | <nribeka> i will ask for more medical terminology to you or shaun docpaul :D |
| 23:22:36 | <nribeka> the presentation in 23andme is interesting :) |
| 23:32:52 | <nribeka> docpaul thank you for the 23andme :D |
| 23:48:03 | <nribeka> docpaul, i'm off to bed. tty next time docpaul :) |
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